similar to: Codoc mismatches

Hi, I have a function knit_expand() and its source/Rd are below: https://github.com/yihui/knitr/blob/master/R/template.R#L43-L44 https://github.com/yihui/knitr/blob/master/man/knit_expand.Rd When I run R CMD check on the package I get this warning (with both R 2.15.2 and R-devel): * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object

Hi, Doing 'R CMD check diveMove' is now throwing this message: Data codoc mismatches from documentation object 'sealLocs': Variables in data frame 'sealLocs' Code: id.time.class.lon.lat Docs: class id lat lon time with: R> sessionInfo() R version 2.10.1 (2009-12-14) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C

Hi folks, I am trying to do a clustering and generate a long dendrogram in R on Linux server: ========= data<-read.table(file="mean_ratio.txt.noheader",row.names=1,sep="\t",quote="\"") hc<-hclust(dist(data),"ward") png(file="mean_ratio.txt.noheader.ward.png",bg="white",pointsize=8,width=32767,height=1536) plot(hc,hang=-1)

Hi R useRs: How can I generate a random sample from Maxwell Distribution in C language? Since I know the function rmaxwell {VGAM}, I tried the function r2c {r2c}. But I still cannot find the source code. Thanks for your kind help. RegaRds, 2010-03-12 Randel [[alternative HTML version deleted]]

Hi, I just figured out that I accidentally posted my message in HTML, so I am retrying in plain text only. Sorry. I am currently extending one of our CRAN packages and ran into an unexpected problem when checking the source package. I got some warnings in the step "* checking for code/documentation mismatches". I double checked everything and did not see anything that would

I have problems with Rpad and R 2.10.0 (Windows XP and Windows 7, browser is Firefox) Just starting Rpad by library(Rpad) Rpad() opens the browser and displays the .html files and the .Rpad files in my home directory, but these files do not have links and are not clickable. Doing the same in R 2.9.2 gives clickable links in the browser. Furthermore, in both cases an empty graphics window

Hi, I would like to get a hint on how to debug in the case of #> R CMD check pllib signalling * checking for code/documentation mismatches ... WARNING Error in parse(file, n, text, prompt) : syntax error on line 22 I am able to sort out which of the files is the culprit is by swapping files in and out of the /R and /man directories. But I cannot find the syntax error, the .Rd file seems

Hi all, It is recommended in ?'if' that we use 'else' right after '}' instead of starting a new line, but I noticed deparse() will separate '}' and 'else' when the 'if...else' clause is used inside {...} (e.g. function body). Here is an example: ## if/else inside {} > cat(deparse(parse(text='function(){if (TRUE) {1} else {2}}')),

I'm using the function htmlParse() in the XML package, and I need a little bit help on error handling while parsing an HTML page. So far I can use either the default way: # error = xmlErrorCumulator(), by default library(XML) doc = htmlParse("http://www.public.iastate.edu/~pdixon/stat500/") # the error message is: # htmlParseStartTag: invalid element name or the tryCatch()

Hi, since nobody answered to my first message, I try to explain my problem more clearly and more general this time: I have a data set in my R package "micEcon", which has many variables (82). Therefore, I would like to avoid to describe all variables in the "\format" section of the documentation (.Rd file). However, doing this lets "R CMD check" complain about

Hi all: I finished cox analysis like this: fit_cox<-coxph(Surv(dat$Time, dat$death) ~ dat$CD4 + strata(dat$gender),data=dat); > fit_cox Call: coxph(formula = Surv(data_ori$Time, data_ori$death) ~ data_ori$drug + strata(data_ori$gender), data = data_ori) coef exp(coef) se(coef) z p data_ori$drugddI 0.216 1.24 0.146 1.47 0.14 Likelihood ratio test=2.17 on

Hi: Is there a way we can set up WINBUGS to run 100 simulated datasets on the same model and output results? Or do we have to call in each dataset at a time and repeat the process 100 times manually? Thanks Anamika [[alternative HTML version deleted]]

Hi, I want to compute the pairwise correlation for about 10,000 genes. In Matlab there is a function called 'pdsit' that can do this very efficiently. I am wondering is there a similar function in R? Thanks, RT Ye.

This is kind of a dumb question: I know you can use isdebugged() to find out if a specific function is flagged for debugging, but is there a way to list all the functions that are flagged for debugging? Thanks, Andrew [[alternative HTML version deleted]]

Hello. I've been working an a binding between OCaml and R (i.e. calling R from OCaml, mostly). See below for a taste of it. I'm currently wondering how to load a given R package silently. I tried require(xts, quietly = TRUE) but I still get some ugly output. Is it possible to squeeze off this output on stdout? All the best, Guillaume Yziquel. > yziquel at seldon:~$

Hello, I would like to implement the feature request described here: https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=13287. I think this is a very worthwhile feature. However, I need just a little push in the right direction. When I added either a new command or change the old one to use eqnarray as proposed, the "\\" newline characters were not properly passed to latex - even

tags 688308 +patch thanks A lot of /docs/ is pretty low-level and not all that interesting to be installed by the packages. However some of it is, and in particular some is referenced from the manpages. I've cherry-picked the bits which I think are most interesting in that context. Patch below. 8<--------------- commit 7f8ac283e684b7c713d52ed845cab0704a97abab Author: Ian Campbell <ijc

Sorry, I listed the wrong package in the header of my previous post! >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Dear List, has anyone of you experienced a significant increase in the time it takes to parse an URL via "htmlTreeParse()" when this function is called

On UNIX, I am executing an rsync command, from within a script. The command goes something like this: /usr/bin/rsync --verbose --progress --stats --compress --recursive --times --perms --links --safe-links source_dir/ user at target_machine:/parent_path/source_dir In other words, I am replicating source_dir on a remote machine. It ends up next to a lot of sibling, directories, like this: On

Hi the list, I build a package. They was a mistake in it, but R CMD check did not find it. Is that normal ? Here is what Kurt gets (which is right, I did this mistake): --- 8< ---------------- * checking for code/documentation mismatches ... WARNING S4 class codoc mismatches from documentation object 'LongData-class': Slots for class 'LongData' Code: id other time traj