similar to: R CMD check: Error in .C

After upgrading to R 2.10 and upgrading and testing JGR 1.7, I and other Ubuntu users are getting repeated error messages in JGR that look like this: > Error: could not find function ".getModels" Error: could not find function ".getDataObjects" Error: could not find function ".getOtherObjects" Error: could not find function ".getFunctionsInWS" The

Sorry if this has been answered somewhere else (didn't see it), but is cran2deb fully compatible with Ubuntu? Novice question: I use install.packages() within R. The pros of using sudo apt-get instead seem obvious, but are there any cons I should know about? Thanks -- Etienne Lalibert? ================================ School of Forestry University of Canterbury Private Bag 4800

... sorry for reposting this in a more appropriate forum than r.general ... Hello, I just don't get this and would appreciate if someone could write a line or two: I'm trying to build this package and it stops installing after I add the following to the NAMESPACES file: >importFrom(gsubfn,strapply) The error during the package test is: Error in MyPackage::MyFunction : package

Hello, I just don't get this and would appreciate if someone could write a line or two: I'm trying to build this package and it stops installing after I add the following to the NAMESPACES file: >importFrom(gsubfn,strapply) The error during the package test is: Error in MyPackage::MyFunction : package 'MyPackage' has no name space and is not on the search path Calls:

Dear all, My package has Depends: lme4.0 in the DESCRIPTION. I need to extract the fixed effect of a model and their standard errors. I use coef(summary(model)) inside a function to do that. Model is the output of a call to glmer() from the lme4.0 package. coef(summary(model)) throws an error: $ operator is invalid for atomic vectors I have tracked it down to a problem with summary(model)

Dear useRs, The FD package is intended for ecologists interested in functional diversity (FD). It measures different functional diversity indices from multiple traits (any type of traits). The first version of FD (1.0-0) is now available on CRAN: http://cran.r-project.org/web/packages/FD/ The main functions of FD are: dbFD: Compute different multidimensional FD indices gowdis: Gower

Dear useRs, The FD package is intended for ecologists interested in functional diversity (FD). It measures different functional diversity indices from multiple traits (any type of traits). The first version of FD (1.0-0) is now available on CRAN: http://cran.r-project.org/web/packages/FD/ The main functions of FD are: dbFD: Compute different multidimensional FD indices gowdis: Gower

I need to access some internal function of a package temporarily. These functions normally that are not visible outside of the package. I know the MyPackage:::myfunction mechanism, but that does not solve my problem. Instead, I need to add the "internal namespace" of the package to the search path, then I can run a few commands with these functions available, and then the internal

I'm getting the following form R CMD CHECK mypackage ----------- * checking Rd files ... WARNING Error in Rd[[which]] : subscript out of bounds problem found in ?myfunction.Rd? --------- This is... not the most helpful error. I'd be happy to make a minimal .Rd example file if someone can point me to what a minimal .Rd file has in it. The file is already pretty minimal, so it's

Hi I have a package which was built using R 1.9.1 and everything worked fine. I recently upgraded to R 2.0.1 and tried to re-install my package - and I got: Error in library(mypackage) : 'mypackage' is not a valid package -- installed < 2.0.0? So I tried rebuilding it using my new version of R: R CMD BUILD --binary mypackage hhc: not found cp: cannot stat `mypackage.chm': No

Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is:

I'm putting together an R package. I would like to show example code in the vignette, where example data files (included in the package) are used to generate an (example) output file. I read about using example data in Hadley Wickham's post ( http://r-pkgs.had.co.nz/data.html), and believe I should keep my example data as raw data, as it must be parsed to generate the output. So, I

Hi everyone, I made some tests with Rcmdr, to add a function with default parameters : For example (very simple): myfunction<-function(var="314"){ print("hello") print(var) } if I run myfunction() directly i see : > myfunction() [1] "hello" [1] "314" it's ok. But if i edit de Rcmdr-menu.txt (in

I have a function myFunction(beta,x) where beta is a vector of coefficients and x is a data frame (think of it as a matrix). I want to optimize the function myFunction() by ONLY changing beta, i.e. x stays constant, with 4 constraints. I have the following code (with a separate source file for the function): rm(list=ls()) source('mySourceFile')

When I run the following: cd \Rpkgs rcmd install mypackage -l library I get a message that it cannot find quadprog which is a library that mypackage depends on. Error: package 'quadprog' could not be loaded I previously used C:\Program Files\R\rw2011\library as my library for CRAN packages and did not have a problem but now that I use C:\Program Files\R\library this problem

Dear All, I have seen a number of e mails on this topic but I have not seen a general solution to date. I have Fortran and C source codes and they have been compiled successfully using: R CMD build mypackage And R CMD install mypackage Without error messages. I then open R and tests out two functions and get: > pgl(0.2,1,2,3,4) Error in

Dear All, I have seen a number of e mails on this topic but I have not seen a general solution to date. I have Fortran and C source codes and they have been compiled successfully using: R CMD build mypackage And R CMD install mypackage Without error messages. I then open R and tests out two functions and get: > pgl(0.2,1,2,3,4) Error in

I have some questions about 1. nomenclature, 2. recommended file locations and 3. overall procedure related to creating packages. To the extent that it matters, examples here relate to Windows XP R 2.0.1 beta. The questions are interspersed and prefaced with ***. My understanding is that there are actually 6 forms of a package that one should use in package development: 1.

I have question regarding package installation. What is the difference between check, INSTALL, build and build --binary, which imply which and what order does one normally perform them? I have been trying: R CMD build /mypackage R CMD check /mypackage R CMD build --binary /mypackage in that order but wanted to check that this is right. Also, what portion of the check process can be run

Dear R-users, I am having some issues with a package I am working on (using R 2.12.1 in a Linux environment) and would like to have your opinions/advises. My package - let's call it mypackage for the purpose of this email - passes all checks of R CMD check, except for the following failure message: Error : .onLoad failed in loadNamespace() for 'mypackage', details: call: