similar to: Rcmd check fails on Windows Samba network path in R 2.9.1

Hi Kevin, >>>>> "krc" == krc <krc at odin.mdacc.tmc.edu> >>>>> on Mon, 27 Jun 2005 21:55:37 +0200 (CEST) writes: krc> Full_Name: Kevin R. Coombes krc> Version: 2.1.0 krc> OS: Windows XP krc> Submission from: (NULL) (143.111.224.169) krc> When revC = TRUE and RowSideColors is set to a list of krc>

Hi, Is there a way to turn off the automatic inclusion of "./" at the beginning of a path specified in an \SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like

Full_Name: Kevin Coombes Version: 2.4.0 OS: Windows XP Submission from: (NULL) (143.111.22.24) I'm running R 2.4.0 on a Windows XP machine, with only the default packages loaded. Running Sweave or Stangle on the following Rnw file: -------------- % bug.Rnw \begin{document} Demonstrate an Sweave/Stangle bug. <<info>>= sessionInfo() @ <<getFDR>>= x <- 1 @

Hi, all. I was trying to build my R package with R 2.15.1 32bit and win7. I basically follow the routine in Steven Mosher's blog http://stevemosher.wordpress.com/step-10-build/ After I fixed the path, and built the skeleton of the package, I started command prompt and used the following commands in building my package Rcmd check myPackageName Rcmd build myPackageName Rcmd check

Hi, Consider the following (much simplified) Sweave example: -------------- First, we set the value of $x$: <<chunk1,eval=FALSE>>= x <- 1 @ Then we set the value of $y$: <<chunk2,eval=FALSE>>= y <- 2 @ Thus, the overall algorithm has this structure: <<combined,eval=FALSE>>= <<chunk1>> <<chunk2>> @

Has anyone successfully used Rcmd install or Rcmd check on Windows Vista? I have been successfully been running R itself, just not Rcmd install and Rcmd check. Rcmd check fails, the Ryacas.Rcheck it creates is read-only, I don't have permission to delete it and I have to reset the permissions on it just to delete it. With Rcmd install I am getting the following which looks like I am running

Dear R users, With package.skeleton() i have produced successfully my .Rd??s, ... Now i will run Rcmd check on ..\R\bin\ But Rcmd check (and build) on my Windows XP does not work. It`s a problem with "perl". (Translated i get the message: The instruction Perl is either wrongly written or could not not be found.) In help("check") I found this: "These may not work

Thank you for your help. I??m sorry that I found not the right entries in the R-devel. Now, I have again a problem. After installing all needed things I have run Rcmd INSTALL -l ../mypkg and respectively make mypkg By running Rcmd check I get following message: * checking for working latex ...Error: environment variable TMPDIR not set (or set to unusable value) and no default

Hola! I am using Rcmd build --binary ... on a windows XP system, and am encountering a strange problem. Rcmd claims there are syntax errors in one of mine .Rd files ******* Syntax error: mismatched or missing brackets in I take "brackets" to mean [], and I have none of them in the file, and don't think they are needed. Rcmd prints out the offending file, and in the printout I

Hello, I recently updated to R version 2.13.2. With R version 2.10.0, I often created and installed R packages, however, I cannot do this since updating. In other words, when I type in Rcmd build -binary PACKAGENAME I receive an error message: "Rcmd is not recognized as an internal...". I suspect that this is because Rcmd.exe is no longer installed in the bin folder, but rather, in

Having finally found some free time, I was going to use it to update a bunch of R packages from 2.15 to 3.0. I am running Windows 7, 64-bit professional. This is on a brand-new laptop using vanilla settings when installing the operating system. Problem 1: I installed R3.0 to the default location (C:\Program FIles\R\R-3.0.0). The first thing I tried to do was install BioConductor. This

Hello. When I try to use Rcmd INSTALL to install a package (whether my own or someone else's) for the Windows version of R, I get the following error: C:\>Rcmd INSTALL cluster_1.8.1.tar.gz ---------- Making package cluster ------------ adding build stamp to DESCRIPTION Fatal error: you must specify `--save', `--no-save' or `--vanilla' make[1]: *** [frontmatter] Error 2

Full_Name: David Firth Version: 1.2.3 OS: Windows NT4 Submission from: (NULL) (163.1.103.107) Two things that look like bugs: 1. RCMD INSTALL does not seem to cope with quotes in the Windows path. With my path set to PATH="C:\R\Rtools";"C:\R\rw1023\bin";C:\Perl\bin\;C:\WINNT\system32;C:\WINNT;C:\ mingw2\bin I get, for example, C:\R>RCMD INSTALL boot RCMD

The trailing backslash seems to be the culprit. After looking at rw1020\bin\INSTALL, I noticed $pkg =~ s/\/$//; which I assume is to strip the trailing slash from a package name before obtaining the package name and cleaning out its directory I added $pkg =~ s/\\$//; immediately after this line. Rerunning Rcmd INSTALL C:\rw1011\src\library\bqtl\ with that change seemed to work OK

Hi All, It seems that the question of how may people use (or download) R, and it's packages is one that comes up on a fairly regular basis in a variety of forums (There was also recent thread on the subject on Stack Overflow). A couple of students at UCLA (including myself), wanted to address the issue, so we set up a system to get and parse the cran.stat.ucla.edu APACHE logs every night, and

Dear Team, Don't understand output below. Please advise. Windows98 and rw1041(patched) from 1/25/02. Graham Lawrence C:\>PATH=C:\bin;C:\mingw32;C:\Perl;C:\HtmlWork;C:\R\rw1041\bin;C:\Tcl;C:\Tcl\bin C:\>Rcmd INSTALL C:\R\lattice_0.4-0.tar.gz Bad command or file name C:\>Rcmd C:\>Rcmd Install Bad command or file name C:\>dir C:\R\rw1041\bin Volume in drive C has no

Trying to use rcmd in our Windows environment to launch tasks on remote servers. We are using the job scheduler from Tidal corporation. The problem is the return code that's coming back to the job scheduler,Tidal, is from the RCMD NOT from the tasks that it launched. We need to get the return code from the task that was launched via rcmd. Help Lou Zollo Production Control Manager

Hello R-users: I'm experiencing difficulty in building a package in R 1.4.1 under Windows 2000. When I run Rcmd I get this: F:\r\library>f:\r\bin\rcmd check ringsim Please set TMPDIR to a valid temporary directory F:\r\library>f:\r\bin\rcmd build ringsim Please set TMPDIR to a valid temporary directory This problem was discussed over a year ago - the problem was attributed to a Perl

I changed the path to include C:\Program Files\R\R-2.3.1\bin, but Rcmd check [package] just returns an error: 'Rcmd' is not recognized as an internal or external command, operable program or batch file. Any ideas? I want to be able to compile this package on Windows. [[alternative HTML version deleted]]

The manual page says, that rcmd() is only to be used by root's processes. On other OSes (Solaris, AIX), trying to call rcmd() without being root simply fails. FreeBSD, however, tries to be helpful and invokes rcmdsh in this case, which is inefficient and leaves the stderr's filedescriptor (fd2p) unfilled. Why? My understanding is, this is to make it harder for would-be attackers to