similar to: Rcmd check fails on Windows Samba network path in R 2.9.1

Hi Kevin, >>>>> "krc" == krc <krc at odin.mdacc.tmc.edu> >>>>> on Mon, 27 Jun 2005 21:55:37 +0200 (CEST) writes: krc> Full_Name: Kevin R. Coombes krc> Version: 2.1.0 krc> OS: Windows XP krc> Submission from: (NULL) (143.111.224.169) krc> When revC = TRUE and RowSideColors is set to a list of krc>

Hi, Is there a way to turn off the automatic inclusion of "./" at the beginning of a path specified in an \SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like

Full_Name: Kevin Coombes Version: 2.4.0 OS: Windows XP Submission from: (NULL) (143.111.22.24) I'm running R 2.4.0 on a Windows XP machine, with only the default packages loaded. Running Sweave or Stangle on the following Rnw file: -------------- % bug.Rnw \begin{document} Demonstrate an Sweave/Stangle bug. <<info>>= sessionInfo() @ <<getFDR>>= x <- 1 @

Hi, Consider the following (much simplified) Sweave example: -------------- First, we set the value of $x$: <<chunk1,eval=FALSE>>= x <- 1 @ Then we set the value of $y$: <<chunk2,eval=FALSE>>= y <- 2 @ Thus, the overall algorithm has this structure: <<combined,eval=FALSE>>= <<chunk1>> <<chunk2>> @

Having finally found some free time, I was going to use it to update a bunch of R packages from 2.15 to 3.0. I am running Windows 7, 64-bit professional. This is on a brand-new laptop using vanilla settings when installing the operating system. Problem 1: I installed R3.0 to the default location (C:\Program FIles\R\R-3.0.0). The first thing I tried to do was install BioConductor. This

Hi All, It seems that the question of how may people use (or download) R, and it's packages is one that comes up on a fairly regular basis in a variety of forums (There was also recent thread on the subject on Stack Overflow). A couple of students at UCLA (including myself), wanted to address the issue, so we set up a system to get and parse the cran.stat.ucla.edu APACHE logs every night, and

Hi, all. I was trying to build my R package with R 2.15.1 32bit and win7. I basically follow the routine in Steven Mosher's blog http://stevemosher.wordpress.com/step-10-build/ After I fixed the path, and built the skeleton of the package, I started command prompt and used the following commands in building my package Rcmd check myPackageName Rcmd build myPackageName Rcmd check

Has anyone successfully used Rcmd install or Rcmd check on Windows Vista? I have been successfully been running R itself, just not Rcmd install and Rcmd check. Rcmd check fails, the Ryacas.Rcheck it creates is read-only, I don't have permission to delete it and I have to reset the permissions on it just to delete it. With Rcmd install I am getting the following which looks like I am running

Dear R users, With package.skeleton() i have produced successfully my .Rd??s, ... Now i will run Rcmd check on ..\R\bin\ But Rcmd check (and build) on my Windows XP does not work. It`s a problem with "perl". (Translated i get the message: The instruction Perl is either wrongly written or could not not be found.) In help("check") I found this: "These may not work

Hi, For the first time I have a strange behaviour when checking a package before 'packaging' the code. Looks like a file cannot be read. rcmd check pgirmess * using log directory 'U:/Documents and Settings/pgiraudo/Mes documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session

Thank you for your help. I??m sorry that I found not the right entries in the R-devel. Now, I have again a problem. After installing all needed things I have run Rcmd INSTALL -l ../mypkg and respectively make mypkg By running Rcmd check I get following message: * checking for working latex ...Error: environment variable TMPDIR not set (or set to unusable value) and no default

Dear Team, Don't understand output below. Please advise. Windows98 and rw1041(patched) from 1/25/02. Graham Lawrence C:\>PATH=C:\bin;C:\mingw32;C:\Perl;C:\HtmlWork;C:\R\rw1041\bin;C:\Tcl;C:\Tcl\bin C:\>Rcmd INSTALL C:\R\lattice_0.4-0.tar.gz Bad command or file name C:\>Rcmd C:\>Rcmd Install Bad command or file name C:\>dir C:\R\rw1041\bin Volume in drive C has no

Hola! I am using Rcmd build --binary ... on a windows XP system, and am encountering a strange problem. Rcmd claims there are syntax errors in one of mine .Rd files ******* Syntax error: mismatched or missing brackets in I take "brackets" to mean [], and I have none of them in the file, and don't think they are needed. Rcmd prints out the offending file, and in the printout I

Full_Name: David Firth Version: 1.2.3 OS: Windows NT4 Submission from: (NULL) (163.1.103.107) Two things that look like bugs: 1. RCMD INSTALL does not seem to cope with quotes in the Windows path. With my path set to PATH="C:\R\Rtools";"C:\R\rw1023\bin";C:\Perl\bin\;C:\WINNT\system32;C:\WINNT;C:\ mingw2\bin I get, for example, C:\R>RCMD INSTALL boot RCMD

Hello. When I try to use Rcmd INSTALL to install a package (whether my own or someone else's) for the Windows version of R, I get the following error: C:\>Rcmd INSTALL cluster_1.8.1.tar.gz ---------- Making package cluster ------------ adding build stamp to DESCRIPTION Fatal error: you must specify `--save', `--no-save' or `--vanilla' make[1]: *** [frontmatter] Error 2

Hello R-users: I'm experiencing difficulty in building a package in R 1.4.1 under Windows 2000. When I run Rcmd I get this: F:\r\library>f:\r\bin\rcmd check ringsim Please set TMPDIR to a valid temporary directory F:\r\library>f:\r\bin\rcmd build ringsim Please set TMPDIR to a valid temporary directory This problem was discussed over a year ago - the problem was attributed to a Perl

Hi, rcmd requires a temporary directory identified by the value of the environment variable "TMPDIR". Unfortunately, if the directory name has a space in it, rcmd errors out. For example, the standard temporary file "TMP" for xp is like: c:\documents and settings\r_user\local settings\temp If TMPDIR is defined via the Windows/XP "standard" way, i.e., set

The trailing backslash seems to be the culprit. After looking at rw1020\bin\INSTALL, I noticed $pkg =~ s/\/$//; which I assume is to strip the trailing slash from a package name before obtaining the package name and cleaning out its directory I added $pkg =~ s/\\$//; immediately after this line. Rerunning Rcmd INSTALL C:\rw1011\src\library\bqtl\ with that change seemed to work OK

Hello, I recently updated to R version 2.13.2. With R version 2.10.0, I often created and installed R packages, however, I cannot do this since updating. In other words, when I type in Rcmd build -binary PACKAGENAME I receive an error message: "Rcmd is not recognized as an internal...". I suspect that this is because Rcmd.exe is no longer installed in the bin folder, but rather, in

Hola! I got past the problems I asked about two days ago, thanks. No I am updating CRAN package asypow (the daily package check on CRAN gave warnings due to .Rd problems, fixed). Now it PASSED Rcmd check (WindowsXP home edition, rw2000dev, on a new toshiba laptop, if that matters.) but then Rcmd build --binary gives problems: . . . preparing package asypow for lazy loading Error in