similar to: R-devel:codocClasses() now finds more --> R CMD check warnings

Hi, The R CMD check is successful in R 3.0.1 but fails to install package lmerTest under R-devel r63910, Here is what I get: ** preparing package for lazy loading Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, : no definition was found for superclass "merMod" in the specification of class "merModLmerTest" In DESCRIPTION file I have:

promptClass fails to identify methods associated with the class. Here is a fix: Index: promptClass.R =================================================================== --- promptClass.R (revision 41719) +++ promptClass.R (working copy) @@ -165,7 +165,7 @@ if (nmeths > 0) { .meths.body <- " \\describe{" for (i in 1:nmeths) { - .sigmat

Function/file names are hypothetical. Say I have written myfunction.R, which calls myfunction.c via .C("myfunction", ...). I've compiled successfully myfunction.c via R CMD SHLIB myfunction.c in the terminal. Then, in the R console: dyn.load("myfunction.so") source("myfunction.R") test <- myfunction() # works fine So everything is in order, myfunction works

Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is:

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

I will repost on R-devel. -- Bert On Tue, Jul 17, 2012 at 10:32 AM, Prof Brian Ripley <ripley@stats.ox.ac.uk>wrote: > On 17/07/2012 18:20, Bert Gunter wrote: > >> Folks: >> >> sessionInfo() >> R version 2.15.0 (2012-03-30) >> Platform: i386-pc-mingw32/i386 (32-bit) >> >> locale: >> [1] LC_COLLATE=English_United States.1252 >> [2]

The help page for INSTALL says, in part, Some package sources contain a `configure' script that can be passed arguments or variables via the option `--configure-args' and `--configure-vars', respectively, if necessary. The latter is useful in particular if libraries or header files needed for the package are in non-system directories. In this case, one can

Hi all, R CMD check does not work for me under Windows. This is the error R CMD check mypackage.tar.gz * checking for working latex ... OK tar: and: Not found in archive tar: Settings/miguez/ ... /00_pkg_src: Not found in archive tar: Error exit delayed from previous errors Error: cannot untar mypackage.tar.gz I know tar is available because R CMD build created the tarball in the first place

Hello, All: How can I obtain the location of an example data file in a package during "R CMD check"? I want to include sample raw data files in a package and have them read by a function in the package. It occurs to me to put such a file in "\inst\rawdata" and have examples find the data using something like "system.file('rawdata',

I'm trying to get ready to submit a package to CRAN, but in order for the package to install on OS X, I need to temporarily set the environment variable NOAWT=1. I put 'export NOAWT=1' in my package's 'configure' script, and 'R CMD INSTALL MyPackage' returns with no errors. However when I do 'R CMD CHECK MyPackage', the installation test fails, because

I'm trying to get ready to submit a package to CRAN, but in order for the package to install on OS X, I need to temporarily set the environment variable NOAWT=1. I put 'export NOAWT=1' in my package's 'configure' script, and 'R CMD INSTALL MyPackage' returns with no errors. However when I do 'R CMD CHECK MyPackage', the installation test fails, because

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

I've had repeated problems with promptClass missing methods, usually telling me a class has no methods when it does. In my current case, I've defined an S4 class "mspathCoefficients" with a print method setMethod("print", signature(x="mspathCoefficients"), function(x, ...) { # etc The file promptClass creates has no methods in it. >

Dear R-helpers, www.statistik.lmu.de/~*leisch*/*Sweave*/*Sweave*-Rnews-2003-2.pdf says that R CMD build creates the pdf from a .Rnw file. But when I do R CMD build followed by R CMD check it gives me a warning that there is a vignette without a PDF. My query is : when R CMD build works it creates a pdf in the doc subdirectory of the directory returned by system.file(package = mypackage) and not

Hello everybody, Currently I'm developing a library, which uses some functions from another package (namely plotrix). Consequently, I listed this dependency in the DESCRIPTION file. When I try to run "R CMD check mypackage", the check fails, for the library plotrix cannot be found on the system. As far as I understood "R CMD check" uses --vanilla implicitly, thus, no

A new version of the package has been committed to the r-devel branch. There are a lot of changes, mostly non-visible, many of those to tighten up some possible problems. For example, slot assignment now checks the validity of the value being assigned, and basic classes cannot be overriden. There is a version of the promptClass function by Vince Carey, to produce shell of documentation for a

Hi All, Apologies in advance if this is not the right email to post this question. I successfully created my first R package myPackage1. Now I want to create another R package myPackage2 which requires functions from myPackage1. However when I try R CMD check myPackage2 I get the following error * checking for working pdflatex ... OK * using log directory

A recently committed revison of R-devel (47740) has introduced a new mechanism for ordering superclasses consistently, with related changes for selecting inherited methods. As part of the process, a function testInheritedMethods has been introduced that examines method selection for the relevant subclasses and reports ambiguities. Maintainers of packages that have methods involving multiple

This is an enquiry not so much about what the code for loadNamespace does, but rather about the intent and design of loadNamespace, and how it interacts with the `::` function, which seems to me to follow a slightly different philosophy. It is not an urgent question - the issue that started me wondering has been resolved another way - but I would like to complete my understanding of this aspect