Displaying 20 results from an estimated 300 matches similar to: "About " Error: C stack usage is too close to the limit""
2009 May 18
0
About " Error: C stack usage is too close to the limit"
Hi everyone!
I meet one problem when embedding R in C code, when I run the the R code in one child thread ,
it always print error info:
Error: C stack usage is too close to the limit
I also try to set R_CStackLimit = (uintptr_t)-1 to disable the C stack check as the R-ext doc say,
but it still does not work.
it is interesting that if i put the R code in the main
2009 May 19
0
About " Error: C stack usage is too close to the limit"--resend
Hi everyone!
I meet one problem when embedding R in C code, when I run the the R code in one child thread ,
it always print error info:
Error: C stack usage is too close to the limit
I also try to set R_CStackLimit = (uintptr_t)-1 to disable the C stack check as the R-ext doc say,
but it still does not work.
it is interesting that if i put the R code in the main
2009 May 07
2
How to call time series functions from C ?
Hi everyone,
I meet the problem to call R from C.
Can someone tell me is it possible to call time series functions(such as ar and arima)from C program on linux platform, and then compile the C program to a standalone executable file?
I know we can call some function defined in Rmath.h , but I have not found the entry point for time series function.
I would very much appreciate
2015 Aug 20
2
Child thread libR.so
So I'm working on a custom front end to R, in one mode of the front
end I dynamically load libR.so into a child worker thread. I'm very
careful to make sure it is loaded by a single thread and loaded only
once, but since it is a child thread it violates assumptions made by
the stack size checking inside of R and I get innumerable errors along
the lines of
Error: C stack usage
2019 Apr 05
2
Parsing code with newlines
Hello!
This is my first post here. I came across the very same problem.
It can be reproduced within modified tests/Embedding/RParseEval.c
Actually this example has another issue, namely it doesn't wrap
everything in R_ToplevelExec . This is a major show stopper for
newcomers as that function is barely mentioned anywhere and longjmp into
terminated setuploop function followed by R_suicide
2007 Jul 06
1
How to disable R's C stack checking
Hi all,
I'm developing an application on Mac OS X Darwin which embeds R.
However, the application always crashes due to the C stack checking.
I know that R_CStackLimit can be set to -1 to disable the stack
checking, but I don't know where to put the code "R_CStackLimit=-1".
Please give some instructions.
Thank you very much!
Here is my compiler infomation:
$g++ -v
Using
2006 Nov 21
2
Symbolic derivation using D in package stats - how do I properly convert the returned call into a character string?
Dear all,
I am using the function 'D' in the 'stats' package to perform symbolic
derivation.
This works very well and it is much faster than e.g. Mathematica (at
least for my purposes).
First, I would like to thank the development team for this excellent
function.
However, I run into trouble in some cases, particularly when I am to do
some operations on long expressions
2007 Jun 20
1
nlme correlated random effects
I am examining the following nlme model.
asymporig<-function(x,th1,th2)th1*(1-exp(-exp(th2)*x))
mod1<-nlme(fa20~(ah*habdiv+ad*log(d)+ads*ds+ads2*ds2+at*trout)+asymporig(da.p,th1,th2),
fixed=ah+ad+ads+ads2+at+th1+th2~1,
random=th1+th2~1,
start=c(ah=.9124,ad=.9252,ads=.5,ads2=-.1,at=-1,th1=2.842,th2=-6.917),
data=pca1.grouped)
However, the two random effects (th1 and th2)
2007 Jun 01
3
Question on the R's C stack limit
Dear r-devel members,
I encountered a C stack limit issue, when I tried to embed R 2.5 into my
application. In the R-exts document, it says:"Note that R's own front ends
use a stack size of 10Mb". I desire to know: is it possible to decrease this
stack size
by modifying R's source code? If it's possible, which part of the source
code is responsible for the issue?
Thank
2009 Sep 07
1
Usage of OCaml/R binding.
Hello.
I've been pulling together a Debian package out of Maxence Guesdon's
OCaml bindings for R. Will be available from my website as soon as I get
my router to obey me. Here's Maxence's bindings:
http://pauillac.inria.fr/~guesdon/ocaml-r.en.html
The purpose of this software is to access R from OCaml programs.
However, my issue is that after having pulled things to a Debian
2009 Sep 07
1
Usage of OCaml/R binding.
Hello.
I've been pulling together a Debian package out of Maxence Guesdon's
OCaml bindings for R. Will be available from my website as soon as I get
my router to obey me. Here's Maxence's bindings:
http://pauillac.inria.fr/~guesdon/ocaml-r.en.html
The purpose of this software is to access R from OCaml programs.
However, my issue is that after having pulled things to a Debian
2005 Nov 16
2
Newton-Raphson
Dear all,
I want to solve a score function by using Newton-Raphson algorithm. Is there such a fucntion in R? I know there's one called optim, but it seems only doing minimizing or maximizing.
Thanks,
Jimmy
2004 Mar 19
2
(no subject)
How to use "contour" function?
I type "contour(th1,th2,SumofSquares,levels=c(seq(1000,4000,200)))"
But I didn't see contour in the plot, I guess it is because my data is so
big that contour is out of range.
Does anybody know how to fix this problem?
here th1 is a 1x101 array(158741.8-298529.6)
th2 is another 1X101 array(-0.0058352269-0.2093140935)
SumofSquares is a
2007 Jun 28
1
How to set R_CStackLimit
Hi,
I have tried to disable stack checking by set R_CStackLimit to -1. However,
it always crashes my win32 multiple threads program. I am using R-2.5.0. My
code looks like:
#include <Rversion.h>
#if (R_VERSION >= R_Version(2,3,0))
#define R_INTERFACE_PTRS 1
#define CSTACK_DEFNS 1
#include <Rinterface.h>
#endif
and then, add below line to my main function:
R_CStackLimit =
2003 Mar 17
1
help with likelihood contour plot
Can some kind person point out my error here? I'm trying to set up a
grid for a countour plot of a likelihood function.
> u <- rnorm(20,9.5,2.5)
> # sample of size 20 from N(9.5,2.5^2)
> loglik <- function(th1,th2) {
+ n <- length(u)
+ -(n/2)*log(2*pi*th2^2)-0.5*sum((u-th1)^2/th2^2)
+ }
> x <- seq(4.5,14.5,len=50)
> y <- seq(0.5,6,len=50)
> f <-
2007 Aug 29
1
Modifying R_CheckStack for a speed increase
Greetings R developers,
R will run a little faster when executing "pure R" code if the function
R_CheckStack() is modified.
With the modification, the following code for example runs 15% faster
(compared to a virgin R-2.5.1 on my Windows XP machine):
N = 1e7
foo <- function(x)
{
for (i in 1:N)
x <- x + 1
x
}
2019 May 19
4
most robust way to call R API functions from a secondary thread
Hi,
As the subject suggests, I am looking for the most robust way to call an (arbitrary) function from the R API from another but the main POSIX thread in a package's code.
I know that, "[c]alling any of the R API from threaded code is ?for experts only? and strongly discouraged. Many functions in the R API modify internal R data structures and might corrupt these data structures if
2008 May 29
6
is it possible to build two privileged domain at boot time?
Hi All,
I am not very familiar with xen details. Now I am thinking of
building two privilged domain(domain 0 not driver domain) at boot time.
The other question is that wether it is possible to create another
domain 0 by domain-builder running in domain0? Does it make sense
when domain 0 is shut down unexpectedly another domain 0 can run at
once. Maybe it is absurd. I am looking forwards
2009 May 21
1
"Error: C stack usage is too close to the limit" (can't understand explanations of how to fix this)
Apparently the way to deal with this error message is to set
R_CStackLimit = (uintptr_t)-1
I tried typing this in the R console, but it says Error: object
"R_CStackLimit" not found.
So where do I type it? In one of the initialization files that R uses when
it starts up?
I can't find the answer anywhere. Please note that I don't understand words
like "DLL" or
2004 Dec 16
2
partial linear model
Dear all,
Are there any packages can estimate the partial linear
model. Or any one can give me any suggestions.
Many thanks in advance.
Jin