Displaying 20 results from an estimated 7000 matches similar to: "Error in .readRDS(nsInfoFilePath) : unknown input format (PR#13660)"
2009 Apr 16
1
Error in .readRDS(nsInfoFilePath) : unknown input format (PR#13659)
Full_Name: Jeroen Jansen
Version: 2.7.2
OS: Windows XP Pro
Submission from: (NULL) (131.211.169.89)
Allready with startup I get error message:
R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type
2017 Aug 22
0
How to benchmark speed of load/readRDS correctly
You need to study how reading files works in your operating system. This question is not about R.
--
Sent from my phone. Please excuse my brevity.
On August 22, 2017 5:53:09 AM PDT, raphael.felber at agroscope.admin.ch wrote:
>Dear all
>
>I was thinking about efficient reading data into R and tried several
>ways to test if load(file.Rdata) or readRDS(file.rds) is faster. The
2018 Apr 03
1
[FORGED] recordPlot/replayPlot not working with saveRDS/readRDS
>>>>> Paul Murrell <paul at stat.auckland.ac.nz>
>>>>> on Tue, 3 Apr 2018 09:41:56 +1200 writes:
> Hi What you are doing "wrong" is loading a recordedplot
> into the same session that it was created in. The
> saveRDS()/readRDS() works if you save in one R session and
> then read in a different R session. The
2012 Sep 15
2
Risk of readRDS() not detecting race conditions with parallel saveRDS()?
I hardly know anything about the format used in (non-compressed)
serialization/RDS, but hoping someone with more knowledge could give
me some feedback;
Consider two R processes running in parallel on the same unknown file
system. Both of them write and read to the same RDS file foo.rds
(without compression) at random times using saveRDS(object,
file="foo.rds", compress=FALSE) and
2018 Apr 02
0
[FORGED] recordPlot/replayPlot not working with saveRDS/readRDS
Hi
What you are doing "wrong" is loading a recordedplot into the same
session that it was created in. The saveRDS()/readRDS() works if you
save in one R session and then read in a different R session. The
assumption is that if you are still in the same session that created the
recordedplot you still have the recordedplot (e.g., you can just do
replayPlot(r) instead of
2023 Nov 15
1
saveRDS()/readRDS() on environments
Dear r-devel,
I was surprised to see that saveRDS() and readRDS() work quite well with
environments, see below:
```
z <- 3 # in global env
y <- new.env()
y$a <- 1
x <- new.env(parent = y)
x$b <- 2
saveRDS(x, "x.RDS")
# in a new session
x <- readRDS("x.RDS")
y <- parent.env(x)
x$b
#> [1] 2
y$a
#> [1] 1
parent.env(y)
#> <environment:
2017 Aug 22
0
How to benchmark speed of load/readRDS correctly
The large value for maximum time may be due to garbage collection, which
happens periodically. E.g., try the following, where the
unlist(as.list()) creates a lot of garbage. I get a very large time every
102 or 51 iterations and a moderately large time more often
mb <- microbenchmark::microbenchmark({ x <- as.list(sin(1:5e5)); x <-
unlist(x) / cos(1:5e5) ; sum(x) }, times=1000)
2017 Aug 22
1
How to benchmark speed of load/readRDS correctly
Note that if you force a garbage collection each iteration the times are
more stable. However, on the average it is faster to let the garbage
collector decide when to leap into action.
mb_gc <- microbenchmark::microbenchmark(gc(), { x <- as.list(sin(1:5e5)); x
<- unlist(x) / cos(1:5e5) ; sum(x) }, times=1000,
control=list(order="inorder"))
with(mb_gc,
2017 Aug 22
4
How to benchmark speed of load/readRDS correctly
Dear all
I was thinking about efficient reading data into R and tried several ways to test if load(file.Rdata) or readRDS(file.rds) is faster. The files file.Rdata and file.rds contain the same data, the first created with save(d, ' file.Rdata', compress=F) and the second with saveRDS(d, ' file.rds', compress=F).
First I used the function microbenchmark() and was a astonished
2018 Apr 02
3
recordPlot/replayPlot not working with saveRDS/readRDS
The documentation for recordPlot says the following:
> As of R 3.3.0, it is possible (again) to replay a plot from another R session using, for example, saveRDS and readRDS.
However, I haven't been able to save and restore a plot displaylist
and have it work within the same R session, using R 3.4.3 or 3.3.3.
Here's an example:
# Save displaylist for a simple plot
2012 Jul 29
1
readRDS, In as.double.xts(fishReport$count) : NAs introduced by coercion
Hello,
I looked in the R-help but could not find an archive addressing the
following. I would like to convert a character to numeric after reading a
file with RDS extension. After using as.numeric, I checked if it is
numeric. It was not converted. Please help.
Here is my code
>Report <- readRDS(file="RDS/Report.RDS")
> Report[1:2,]
dive_id date
2009 Mar 12
0
help.search(): "Error in .readRDS(hs_file) : error reading from connection" (PR#13591)
Full_Name: Don Maszle
Version: R version 2.8.1 (2008-12-22)
OS: Linux hood.mendelbio.com 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
Submission from: (NULL) (206.86.87.3)
I have resolved the problem, but this is a possible regression to a problem
listed in the bug fixes for 2.3.1.
After a new installation, help.search() on any search string without a
2011 Oct 18
9
readRDS and saveRDS
Hi all,
Is there any chance that readRDS and saveRDS might one day become
read.rds and write.rds? That would make them more consistent with the
other reading and writing functions.
Hadley
--
Assistant Professor / Dobelman Family Junior Chair
Department of Statistics / Rice University
http://had.co.nz/
2017 Jun 06
0
Error in readRDS(dest) SOLVED
On Wed, 31-May-2017 at 10:05AM -0400, Martin Morgan wrote:
|> On 05/31/2017 04:38 AM, Patrick Connolly wrote:
|> >When I check out those directories in a terminal, there's a big diffrence:
|> >
|> >With R-3.4.0
|> >~ > ll /tmp/RtmpFUhtpY
|> >total 4
|> >drwxr-xr-x 2 hrapgc hrapgc 4096 May 31 10:45 downloaded_packages/
|> >-rw-r--r-- 1 hrapgc
2017 Aug 09
1
Problem with serialization via readRDS() on a textConnection()
(Sorry for not linking to your message; I accidentally deleted the
original copy of your message.)
Your code
> zz = textConnection('tempConnection', 'wb')
> saveRDS(c("a", "b", "c"), zz, ascii = TRUE)
> serialized_obj = paste(textConnectionValue(zz), collapse='\n')
> readRDS(textConnection(serialized_obj))
Error in
2017 Jul 07
1
[New Patch] Fix disk corruption when writing
Le 07/07/2017 ? 16:52, Duncan Murdoch a ?crit :
> On 07/07/2017 9:54 AM, Serguei Sokol wrote:
>> Le 07/07/2017 ? 01:09, Duncan Murdoch a ?crit :
>>> On 06/07/2017 6:44 PM, Sokol Serguei wrote:
>>>> Duncan Murdoch has written at Thu, 6 Jul 2017 13:58:10 -0400
>>>>> On 06/07/2017 5:21 AM, Serguei Sokol wrote:
>>>>>> I propose the
2017 Aug 08
0
Problem with serialization via readRDS() on a textConnection()
Hi All,
I had working code under R v3.2 that serialized an object, stored the
serialized object in a database, and then successfully retrieved and
hydrated that object.
I recently updated to R v3.4.1 and the same code now fails.
Here is the code in question (simplified), and the resulting error:
> zz = textConnection('tempConnection', 'wb')
> saveRDS(c("a",
2017 Aug 23
1
How to benchmark speed of load/readRDS correctly
Hi there
Thanks for your answers. I didn't expect that this would be so complex. Honestly, I don't understand everything you wrote since I'm not an IT specialist. But I read something that reading *.rds files is faster than loading *.Rdata and I wanted to proof that for my system and R version. But thanks anyway for your time.
Cheers Raphael
> -----Urspr?ngliche Nachricht-----
2018 Sep 18
0
memory footprint of readRDS()
The ratio of object size to rds file size depends on the object. Some
variation is due to how header information is stored in memory and in the
file but I suspect most is due to how compression works (e.g., a vector of
repeated values can be compressed into a smaller file than a bunch of
random bytes).
f <- function (data, ...) {
force(data)
tf <- tempfile()
2018 Apr 22
2
Problem reading RDS files
Hi there,
I faced a weird problem doing a seemingly simple task in R. Specifically,
when trying for reading an RDS file from the working directory, the
following error is appeared.
Code:
records <- readRDS("tweets.rds")
Error:
Error in readRDS("tweets.rds") : error reading from connection
In addition: Warning message:
In readRDS("tweets.rds") : invalid or