Displaying 20 results from an estimated 2000 matches similar to: "link in base help file fails."
2015 Jan 14
2
Is the tcltk failure in affylmGUI related to R bug 15957
I maintain the package affylmGUI. It works when installed on many
previous versions of R. I have today tested exactly the same code under
R-2.15.3, R-3.0.2, R-3.1.0, R-3.1.1, R-3.1.2 and R-devel.
I have also tested the versions of affylmGUI downloaded by biocLite for
each version of R and the same result applies.
I have no errors under 2.15.3, 3.0.2, 3.1.0 and 3.1.1. The following
error
2012 Nov 19
6
tcltk freezing using MS Windows for R-2.14+
I am the maintainer of a Bioconductor package (affylmGUI) which uses
tcltk. It freezes inconsistently on MS Windows, but not Mac or Unix. see
details below.
After considerable testing I have reduced the problem from a few
thousand lines of code to 30 lines!
If you paste the following lines of code into an R window:
testGUI <- function(){
require(tcltk)
MainWindow <-
2010 Nov 30
2
Windows Rdevel version - no Rgui.exe?
Hi Duncan,
just noticed that after installing the Windows R-2.13.0 build there is
no i386 directory in the R-2.13.0dev/bin directory and hence no
Rgui.exe. Is this intentional with the devel version?
I downloaded from http://cran.ms.unimelb.edu.au/, where it says:
"This is a combined Windows 32/64 bit binary build of the 2010-11-27
r53672 development snapshot of R (which will eventually
2009 Sep 28
1
Windows Laptop specification query
I've read some postings back in 2002/2006 about running R on multiple
core CPUs. The answer was basically separate processes work fine, but
parallelization needs to be implemented using snow/rmpi. Are the answers
still the same?
I ask because we are about to order a laptop running Windows for a new
staff member. Some advice on the following would be helpful.
It will be ordered with Vista,
2015 Jan 14
0
Is the tcltk failure in affylmGUI related to R bug 15957
Seems unlikely that that particular bug is involved. I seem to recall some change related to inadvertent variable capture in .TkRoot$env (?). At any rate, we currently have
> parent.env(.TkRoot$env)
<environment: R_EmptyEnv>
which used to be
> parent.env(.TkRoot$env)
<environment: R_GlobalEnv>
as a result, this won't work any more because R_EmptyEnv has no operators and
2015 Jan 18
1
Is the tcltk failure in affylmGUI related to R bug 15957
Thanks Peter and Dan for your replies.
After learning a bit more about tcltk and environments etc. I have replaced
Try(n <- evalq(TclVarCount <- TclVarCount + 1, .TkRoot$env))
with
Try(n <- .TkRoot$env$TclVarCount <- .TkRoot$env$TclVarCount +1L)
as you suggest.
It now works for both R-3.1.1 and R-3.1.2+
(My understanding is that the Try function is there to put a GUI box
2008 Sep 09
2
match problem by rownames
Hi all,
While dat['a1',] and dat['a10',] produce the same results in the
following example, I'd like dat['a1',] to return NAs.
dat <- data.frame(x1 = paste(letters[1:5],10, sep=''), x2=rnorm(5))
rownames(dat) <- dat$x1
dat['a1',]
dat['a10',]
> sessionInfo()
R version 2.7.2 (2008-08-25)
i386-pc-mingw32
locale:
2010 Nov 03
1
rgl.snapshot() : no longer works?
Hi all,
> library(rgl)
> plot3d(1,1,1)
> snapshot3d("somefile.png")
Error in rgl.snapshot(...) :
pixmap save format not supported in this build
Why does this no longer work?
thanks,
Remko
> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252
[3]
2008 Mar 25
1
regexp with [:upper:] (PR#11032)
Full_Name: Mark Bravington
Version: 2.6.2 patched
OS: Windows XP Pro
Submission from: (NULL) (140.79.22.104)
> grep( '[:upper:]', letters, val=T) # shurely shouldn't match anything ??
[1] "e" "p" "r" "u"
The converse ( '[:lower:]' and LETTERS) seems to work OK.
--please do not edit the information below--
Version:
platform =
2013 Apr 23
1
httpd error with and help_type = 'html', package = NULL
Having loaded a package that masks an object from another package, calling
help(conflictedname, help_type = 'html')
instead of producing a page giving the choices of help page available
The page produced is
Error in httpd("/library/NULL/help/nobs", NULL, NULL, c(48, 6f, 73, 74, :
replacement has length zero
This example is reproduced using
library(gdata)
help(nobs,
2011 Aug 15
2
A small nag
Hi,
I am not sure how to fix the following error.
LGD <- c(11.6, 12.3, 15.8, 33.1, 43.5, 51.3,
67.3, 84.9)
cor (x=(file [1:47231,3:10]), y= rep (LGD, 47231), method = "pearson")
Error in cor(x = (file[1:47231, 3:10]), y = rep(LGD, 47231), method =
"pearson") :
incompatible dimensions
> sessionInfo()
R version 2.13.0 (2011-04-13)
2010 Oct 19
1
DLL not found
Dear R-helpers,
I have a fresh installation of windows vista, and R 2.12.0 (session info below).
Problem:
> require(sp)
Loading required package: sp
Error in library.dynam(lib, package, package.lib) :
DLL 'lattice' not found: maybe not installed for this architecture?
> require(lattice)
Loading required package: lattice
Failed with error: ?package 'lattice' is not
2006 Oct 29
2
Rgui.exe fix for "console not found" buffer overflow problem
I'm using R on Windows XP Professional SP2.
I figured out the fix for my buffer overflow problem that did not allow me
to use Rgui.exe for about two weeks. I would keep getting "console not
found" and even when I uninstalled and re-installed got the same problem.
Here's how the problem started. In Rgui.exe, I attempted to get more
visible output in the buffer (I wanted
2011 Sep 16
1
grep problem in R-devel 2.14 r57004
Problem below with PCRE grep in R-devel; works fine in R-patched. (Unless there's been an absolutely massive change in rules for updated PCRE version 8.13; jeez I hope not)
> grep( '[.][.]', '', perl=TRUE)
Error in grep("[.][.]", "", perl = TRUE) :
invalid regular expression '[.][.]'
In addition: Warning message:
In grep("[.][.]",
2010 Nov 24
1
Difficulty loading packages into R version 2.12.0
Apologies for my previous effort in HTML which apparently was scrubbed
Dear R-users
I wonder if I could get advice on the above problem
I have just installed V 2.12.0 (I chose only the 32-bit version) into a new
directory (C:/R) on a 64bit Windows 7 machine
> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_Australia.1252
2017 Jul 13
2
bnlearn and cpquery
Hi all
I have built a Bayesian network using discrete data using the bnlearn
package.
When I try to run the cpquery function on this data it returns NaN for some
some cases.
Running the cpquery in debug mode for such a case (n=10^5, method="lw")
creates the following output:
generated a grand total of 1e+05 samples.
> event has a probability mass of 14982.37 out of
2018 Jun 14
2
makeCluster Stall on 32-bit Windows
Good day,
I'm trying the example cl <- makeCluster(2, type = "SOCK") from the makeCluster documentation and the R command prompt never returns. I am using a 32-bit Windows 10 computer. The problem doesn't happen on another 64-bit Windows 10 computer but does happen on another 32-bit Windows 7 computer. Can anyone reproduce it? Are there any other options that can be passed to
2011 Jun 29
1
R-devel Digest, Vol 100, Issue 28
I get the same style of path as Hadley. This is on Windows 7 Home Premium with SP1.
I start R by clicking on the R-2.31.0 icon.
I'd assumed that it was a change that came with R-2.13.0!
(On 32-bit Windows XP, which I have just checked, I do indeed get the 8.3 paths.)
> R.home()
[1] "C:/Programs/R/R-2.13.0"
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform:
2010 Oct 08
1
R CMD SHLIB changes function name when compiling
Hi,
I'm trying to write a function in C for implementation with .Call. When
compiling using R CMD SHLIB characters seem to be added to the function
name.
Here's the complete C code from the file summariseMCMC.c:
#include<R.h>
#include<Rdefines.h>
#include<Rinternals.h>
void summariseMCMC(SEXP data) {
PROTECT(data=AS_NUMERIC(data));
UNPROTECT(1);
}
Then
2005 Dec 29
1
'last.warning' problem at startup; package Matrix (PR#8453)
On starting an R session, I get the messages:
Fatal errir: unable to restore save data in .RData
Error in fun(...): couldn't find function "assignInNamespace"
Error: .onLoad failed in 'loadNamespace' for 'Matrix'
The only object in my .RData is last.warning, thus:
> last.warning
$"optim or nlminb returned message false convergence (8)"