similar to: [OT] Debian now has a new section 'gnu-r'

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

We would like to announce the release of our software MatchIt, now available on CRAN. MatchIt implements a variety of matching methods for causal inference. Abstract: MatchIt implements the suggestions of Ho, Imai, King, and Stuart (2004) for improving parametric statistical models by preprocessing data with nonparametric matching methods. MatchIt implements a wide range of sophisticated

We would like to announce the release of our software MatchIt, now available on CRAN. MatchIt implements a variety of matching methods for causal inference. Abstract: MatchIt implements the suggestions of Ho, Imai, King, and Stuart (2004) for improving parametric statistical models by preprocessing data with nonparametric matching methods. MatchIt implements a wide range of sophisticated

On the topic of when to use "suggests" and "depends" and on R version requirements. I have cc'd this message to R-devel because I am curious about what senior developpers think about these issues. The problem arises because we are using some functions from the package "matchit" in a new version of our package "portfolio". We are listing the matchit in

Dear R users, I am trying to estimate to estimate the average treatmen effect on the treated (ATT) using first the MatchIt software to weight the data set and, after this, the Zelig software as shown in Ho et al. (2007). See here for an explanation of how to apply this technique in R: http://imai.princeton.edu/research/files/matchit.pdf I encounter a slight problem when I apply the weights that

Hello, I am trying to use R for propensity score matching in SPSS.? I have version 21 of SPSS and I downloaded R 2.14.2 as directed as well as the R Essentials plug-in.? I have run a test for R and it appears to be running correctly.? I then downloaded psmatching3 and have tried to use the PS matching dialog in SPSS.? However, I continue to run into problems as SPSS reports that there is no

Hi there, Does anyone know how to extract data from a function that prints out two or more summaries? In the function below (the whole code is provided) we get 5 different tables of data. I would like to split each of these tables in a separate file (while the function itself shouldn't be changed), so that further analysis on each data set could be carried out. Your help is deeply

Hello! If I understand this listserve correctly, I can email this address to get help when I am struggling with code. If this is inaccurate, please let me know, and I will unsubscribe. I have been struggling with the same error message for a while, and I can't seem to get past it. Here is the issue: I am using a data set that uses -1:-9 to indicate various kinds of missing data. I changed

Greetings fellow humans, I am attempting to export a text file after using the MatchIt package to match control with treatment subjects. I attempted to write.table and used the following syntax: "write.table(social,"shaka.txt",sep=" ",quote=FALSE,row.names=FALSE,col.names= FALSE)" But received the following error message: "Error in

UseRs, I tried to install the MatchIt package on Ubuntu 7.04. When loading required dependencies I got the following error message: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/usr/local/lib/R/site-library/optmatch/libs/optmatch.so': /usr/local/lib/R/site-library/optmatch/libs/optmatch.so: cannot map zero-fill pages: Cannot

Hi there dear R users! Anyone knows why does matchit function returns error whenever the "hull" option is used (either "hull.both", "hull.control" or "hull.treat"). Things work well with all the rest of discard options. This is the error msg. >m.out.base <- matchit(formula=f, data=d, method=m, discard="hull.control") [1]

Hi! I am running a simulation testing group balance using different propensity score matching techniques. I am using the MatchIt package to match and analyze the data. Since I am running this analysis many, many times with different simulated data sets, I need to make the output from the MatchIt summary and put it into a dataset and then append each successive run to the end of that dataset.

Dear all, Does anybody know why the following code returns an error message? >library(MatchIt) >library(Zelig) >data(lalonde) > >m.out1<-matchit(treat~age+educ+black+hispan+nodegree+married +re74+re75, method="full", data=lalonde) > >z.out1<-zelig(re78~age+educ+black+hispan+nodegree+married+re74+re75, data=match.data(m.out1, "control"),

Folks, I have a strange situation where: library(MatchIt) f <- function(d) { m <- matchit(treatment ~ lsales + major.industry, data=d, method="nearest", discard="hull.treat") treatmentfirms <- match.data(m, group="treat") list(m=m, treatmentfirms=treatmentfirms) } res <- f(ex) does not work at the match.data() call,

This may be a really obvious question but I just can't figure out how to do it. I have a small dataset that I am trying to compare to some controls. It is essential that the controls are matched on Cancer Stage (a numerical factor between 1 and 4), and then ideally on Age (integer), Gender (factor), Performance Status(factor). I'm using matchit to try and do this, but it seems to give

look at dev.new() to specify plot window size and then ?layout to specify number and size of each plot in the window Jiaqi.Zhang wrote > Hi, all, > > I am working on the following code to learn how to plot graphs together. I > used the par(mfrow=c(1,3)) function to try to put all three plot() graphs > together. But it always fail without any error message? Can anybody help

Hi there, I'm wondering what Zelig in the following situation (code below) actually does. Is this considered as a so called regression adjustment after the propensity score matching? library(MatchIt) library(Zelig) data(lalonde) re78 represents the outcome variable 1. With Zelig m.out <- matchit(treat ~ age + educ + black + hispan + married + nodegree + re74 + re75, data = lalonde)

Dear R-Devel, I have had it in my mind for some time now that a Task View related to R and education might be a good thing. There are currently 19 Task Views, covering a broad spectrum of general topics for which R may be used. The homepage lists 64 books related to R, and several of them have accompanying packages on CRAN. There is a wiki and a host of contributed documentation. We also have a

R-devel, There has been some confusion on the MatchIt package mailing list on the meaning of [--install=no] in the comment column of CRAN's automated package check. It's my understanding that, at the very least, a package marked like this will not have its test cases run each night. Are there other checks that are omitted? How, if at all, are such install flags related to the

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })