similar to: R CMD config doesn't export JAVA_LD_LIBRARY_PATH (PR#13165)

Having difficulties getting rJava to install on my Debian Squeeze box. Perused the R-help list and tried some things that have worked for others but not for me. Below is the output of my attempted build, R CMD javareconf -e, and sessionInfo(). Note I tried the R CMD javareconf also as root, restarted R after each of these, all no help. * Installing *source* package ?rJava? ... checking for

Hi All, Running R CMD javareconf -e (or R CMD javareconf as root I am rot on my machines) Fails. / [root at penguins1lanalt etc]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_30 Java home path : /usr/java/jre1.6.0_30 Java compiler : not present Java headers gen.: Java archive tool: Java library path:

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

attempting to install rJava on R-2.7.0, x86_64 platform, config.log shows the following error: configure:3880: checking whether JNI programs can be compiled configure:3898: gcc -m64 -std=gnu99 -o conftest -g -O2 -I/path/to/x86-64-linux/jdk-1.6.0_06/jre/../include conftest.c -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64/server -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64

Hi, I would like to test the new package RGG (R Gui Generator). This package requires the installation of several other package. One of them is rJava. I installed sun-java6-jdk and run the R CMD javareconf but the installation still fails ! Do you have any ideas ? * Installing *source* package ‘rJava’ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file

I am on a fedora server on which I am not root privileges. I am trying to locally install rJava... Here are my steps : $uname -a Linux 2.6.18-194.17.4.el5 #1 SMP Mon Oct 25 15:50:53 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux $ java -version java version "1.6.0_22" Java(TM) SE Runtime Environment (build 1.6.0_22-b04) Java HotSpot(TM) 64-Bit Server VM (build 17.1-b03, mixed mode) $ echo

I've rolled up R-2.5.0.tar.gz a short while ago. This is a development release which contains a number of new features. In particular: - Object name completion by integration of package 'rcompletion' by Deepayan Sarkar - New recommended package 'codetools' by Luke Tierney - New Rscript front-end, which enables shell-like R scripting also, a number of mostly minor

I've rolled up R-2.5.0.tar.gz a short while ago. This is a development release which contains a number of new features. In particular: - Object name completion by integration of package 'rcompletion' by Deepayan Sarkar - New recommended package 'codetools' by Luke Tierney - New Rscript front-end, which enables shell-like R scripting also, a number of mostly minor

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

Hi, I met a problem when I binding JAVA. 1. download xapian-bindings-0.9.10.tar.gz to my local. 2. unzip binding file. 3. input ./configure --with-java in cygwin. 4 give me error: checking for java... /cygdrive/c/Program Files/Java/jdk1.5.0_11/bin/java checking for javac... /cygdrive/c/Program Files/Java/jdk1.5.0_11/bin/javac checking for jar... /cygdrive/c/Program Files/Java/jdk1.5.0_11/bin/jar

Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o

I'm trying to compile R 2.10.1 on AIX 5.3, and am getting the following error: Error in read.dcf(file = descfile) : Line starting 'Package: tools ...' is malformed! Calls: makeLazyLoading ... code2LazyLoadDB -> loadNamespace -> parseNamespaceFile -> read.dcf Execution halted make[3]: *** [all] Error 1 make[3]: Leaving directory

Before I do that, I would need to remove the gcj stuff that are in /usr/bin. If I know how to remove gcj, I'd gladly do that. However, for the particular version of the OS, the entire GCC seems to be bundled into one rpm, and I could not remove just the gcj component. Neither do I wish to mess with files that are part of some RPMs--- in my experience that's invitation for trouble later.

I remember JGR installation on SuSE 10.3 as a nightmare that eventually I overcame with JGR designers' help. I have installed SuSE 11.1, latest R version and am trying to install JGR again. It is still a nightmare. I have followed the guidelines on http://jgr.markushelbig.org/JGR_on_Linux.html I have made sure I have the so R libraries. I have installed java-1.6.0-sun and its development

I'm trying to compile R 2.10.1 on AIX, and getting the following errors when it is trying to build the tools package: Error in read.dcf(file = descfile) : Line starting 'Package: tools ...' is malformed! Calls: makeLazyLoading ... code2LazyLoadDB -> loadNamespace -> parseNamespaceFile -> read.dcf Execution halted make: *** [all] Error 1 My environment and configure

I've rolled up R-2.4.1.tar.gz a short while ago. This is a maintenance release and fixes a number of mostly minor bugs. See the full list of changes below. You can get it (in a short while) from http://cran.r-project.org/src/base/R-2/R-2.4.1.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core

I've rolled up R-2.4.1.tar.gz a short while ago. This is a maintenance release and fixes a number of mostly minor bugs. See the full list of changes below. You can get it (in a short while) from http://cran.r-project.org/src/base/R-2/R-2.4.1.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core

Starting OpenJDK 10, the 'javah' utility is no more provided [1], and its functionality is provided by 'javac' itself. Hence, do not error out on missing 'javah', and store whether it was found; in case it is not, then: 1) assume 'javac' has the -h parameter to generate the C header, and make use of it 2) tell the buildsystem that

I am not a techie and have been struggling 2 days solid to try and install SJava (the source from http://www.omegahat.org/RSJava/). Does anybody have a binary file for me (I am Windows XP and rw2001)? I have tried installing Perl, mingwin and the cygwin tools but still no luck. When I try “R CMD INSTALL c:\SJava_0.78-0.tar.gz” I get the following (and haven’t a clue what it could mean):

Hi Jeff!! I really don?t know if running R CMD javareconf with sudo has posed a problem here, now or in the past. What I know is sometimes it?s the only way to really config it, if I don?t run with sudo, in the end it asks me if I want to overwrite the configuration from root override rw-r--r-- root/admin for /usr/local/Cellar/r/3.4.4/lib/R/etc/Makeconf? (y/n [n]) y override rw-r--r--