similar to: [Bioc-devel] EBImage: Devel version on Windows not building

Dear lists: I am somewhat puzzled by the use of texi2dvi/pdflatex in R2.7.0. When building EBImage (bioconductor) with 2.7.0 I get the same error both in Windows and Linux, which reads the following: ** building package indices ... * DONE (EBImage) * creating vignettes ... ERROR /usr/bin/texi2dvi: pdflatex exited with bad status, quitting. Error in texi2dvi(file = bft, pdf = TRUE, clean =

Hello, Working with Windows 7 in a HP laptop with R-2.10.1 I download and installed ImageMagick-6.3.7.7-Q16-Windows-dll.exe and GTK 2.12.9-win32-2, then downloaded and installed from local file EBImage_3.2.0.zip and I got: > library(EBImage) Loading required package: abind Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hello all I've just spent a few joyless hours trying to get EBImage to install in R. I'm running Ubuntu (Hardy Heron), fully updated (including R and Imagemagick). EBImage installation seems to work, but when I 'library(EBImage)' I get the following: - - - - Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/qilin/R/i486-pc-linux-

Hello, I've been having some trouble working with the aroma package and have realized that it's my ebimage is at the root of the problem. The package builds but during testing it fails because of an undefined symbol as seen below: installing to /usr/local/lib64/R/library/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices **

Hi group, I've spent half a day trying to figure this out and searched through different forums. I've tried to load EBImage but am getting the following problem: >Error in inDL(x, as.logical(local), as.logical(now), ...) : > cannot initialize ImageMagick >Error: package/namespace load failed for 'EBImage' My path is like this: C:\\Program

Hi, on Windows XP Pro with R version 2.7.1 Patched (2008-06-27 r46012) the 'Cairo' and the 'EBImage' packages does not play well together. Loading EBImage before Cairo cause the following to happen: # Rterm --vanilla > library(EBImage); > library(Cairo) Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Dear all, Following a suggestion by Henrik Bengtsson I installed EBImage/biocondutor package. I also installed ImageMagick and GTK software because EBImage need it. After look at EBImage I find a function that compute Haralick texture on images. I tryed to run it with following simulated image, but I get error. myimage<-as.Image(matrix(sample(100*100),nc=100)) image(myimage)

Hi, Kind of related to the new R-based 'R CMD build' script being sometimes confused on Windows (as reported here a couple of weeks ago https://stat.ethz.ch/pipermail/r-devel/2010-June/057759.html), I also started to observe that the new R-based 'R CMD check' script gets also confused sometimes on Windows in a random way. It seems that sometimes (maybe 1% of the times) running

I am having trouble using the "resize" function (in the package EBImage) with matrices containing double values. Let's say I have a matrix 'b' with these values:   > a = c(1.25,1.555,1.245,1.265,1.656,1.235,1.848,1.959,1.548,1.245454,1.989,1.24) > b = matrix(a,4,3) > b       [,1]  [,2]     [,3] [1,] 1.250 1.656 1.548000 [2,] 1.555 1.235 1.245454 [3,] 1.245 1.848

Dear R users, In last R News, a new package was appeared. EBimage image processing package seems so powerful. But in R News, it is used for the images of cells under microscope. So, i wonder whether there is anyone who use this package for materials science applications such as determination of mean diameter of particles, fibers or pores, estimation of porosity or covering factor. Sincerely...

Hi, After updating R-2.12 on the Bioconductor build system about 1 week ago (we update R every 4-6 weeks for our devel builds), we've started to see something never seen before on Windows: for some BioC packages, 'R CMD build' would produce no output at all (0 byte) and, of course, no source tarball. Even though, the code returned by the command is 0! See an example of this is here:

Hi, I am working on writing some S4 classes that represent multidimensional (brain) image data. I would like these classes to support standard array indexing. I have been studying the Matrix and EBImage (http://www.bioconductor.org/packages/1.9/bioc/html/EBImage.html) packages to see how this is done. When using objects of the "array" class directly, R distinguishes between the calls:

Hi, Since C++ code compiled with g++ 4.6.3 on Windows (the version included in latest Rtools) now can produce things like '1.#IND' when writing doubles to a file (using the << operator), I wonder whether scan() shouldn't support those things. Right now (with recent R devel and latest Rtools) we get errors like: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,

The release version of ChemmineR is failing on windows. It seems to be a build script issue though, possibly something on your side. The package was building fine a few weeks ago and I have not modified it. Can you please have a look? Thanks. "C:/Users/BIOCBU?1/BBS-3?1.6-B/R/bin/Rscript" -e "library(rmarkdown); library(BiocStyle); rmarkdown::render('ChemmineR.Rmd')"

Hi, Warnings issued at installation time are not reported by 'R CMD check'. Some of them are really important and telling something very useful to the developer. See for example this warning: http://bioconductor.org/checkResults/2.9/bioc-LATEST/globaltest/wilson2-checksrc.html Actually, there is no formal warning reported by 'R CMD check' for this package but if you scroll

Hi, I have an S4 class directly derived from 'array' as shown in the code below (EBImage package of Bioconductor 2.1, devel), it simply contains array adding a couple of slots: setClass ("Image", representation (colormode="integer", filename="character", compression="character", resolution="numeric", features="list" ),

Dear all, I'm pleased to announce the release on CRAN of the "mmand" package (for Mathematical Morphology in Any Number of Dimensions). It provides functions for performing mathematical morphology (erode, dilate, etc.), smoothing, and other kernel-based operations on array-like objects of any dimensionality. The package is centred around a flexible function called morph(), which can

Dear all, I'm pleased to announce the release on CRAN of the "mmand" package (for Mathematical Morphology in Any Number of Dimensions). It provides functions for performing mathematical morphology (erode, dilate, etc.), smoothing, and other kernel-based operations on array-like objects of any dimensionality. The package is centred around a flexible function called morph(), which can

For processing events, RGtk2 has moved away from using the old tcl_do hack and now synchronizes on the Windows event loop. In Rgui.exe this works fine (well mostly), but in Rterm.exe, users report the following warning from GLib: "main loop already active in another thread". The most obvious way this could occur is if the Windows event loop were iterating in multiple threads. This does

The Bioconductor build for a package DirichletMultinomial on R Under development (unstable) (2013-02-26 r62077) -- "Unsuffered Consequences" at http://bioconductor.org/checkResults/devel/bioc-LATEST/DirichletMultinomial/george2-buildsrc.html shows * creating vignettes ... ERROR ... Error: processing vignette ?DirichletMultinomial.Rnw? failed with diagnostics: chunk 21 (label