similar to: seeing an S4 method, not using it

Hi, I ran into the following peculiarity involving S4 method dispatch and namespaces. I develop a package which have a namespace and which depends on 'pixmap' package, which itself does not have a namespace. Now, in my package I have a class which has a slot for objects from class "pixmap" and I want to have a "plot" method for this new class. Not to clutter the

Hola! I will want to identify pixels in an image with the mouse, for so getting the image data from the matrix(es), for use in subsequent discriminant analysis. But the following bombs R: (windows XP, rw1071) > str(baboon) list() - attr(*, "size")= int [1:2] 512 512 - attr(*, "cellres")= num [1:2] 1 1 - attr(*, "bbox")= num [1:4] 0 0 512 512 - attr(*,

Hi All, I have a greyscale image that I am reading in through RGDAL and placing in a pixmap object. As an example use the logo.jpg file that comes with the RGDAL package: #Read the file logo <- system.file("pictures/logo.jpg", package="rgdal")[1] x <- new("GDALReadOnlyDataset", logo) #Create the pixmap object xGrey <- getPixmapGDAL(x) Now I would

Full_Name: Roger Bivand Version: 1.7.1 OS: i686-pc-linux-gnu Submission from: (NULL) (129.177.30.18) identify() seg.faults when x is an empty list, when the n argument is given a positive value, avoiding the check for non-positive n (n <- length(x) when x is the non-existent x component of the empty list, and when neither x nor y are components of the list. suggested resolution: add test in

In R-beta (Masked Marvel), when I do the example from the read.pnm help file, this is what happens: x <- read.pnm(system.file("pictures/logo.pgm",package="pixmap")[1]) Warning message: In rep(cellres, length=2): x is NULL so the result will be NULL In R-2.15.3, it's all right. Thanks, Erin Erin M. Hodgess, Ph.D. Associate Professor Department of Computer and

Hi the list, I am defining a new class MyClass. Shortly, I will submit a package with it. Before, I would like to know if there is a kind of "non official list" of what method a new S4 object have. More precisely, personnaly, I use 'print', 'summary' and 'plot' a lot. So for my new class, I define these 3 methods. Is there some other method that a R user can

I have a graphic image in a file (say a *.jpeg or *.png file) and want to put it into a plot. I have segmented the plot area by means of the layout function and successfully plotted my data in the appropriate segments. I cannot find how to put my graphic image onto the same plot. Searching the archives has shed little light on my challenge. Many thanks in anticipation. Gordon > version

Hi, I'm having trouble writing .pnm images which I think is due to a problem with my colour space. The pixmap object seems to be looking for 72 of 8 colours (one per cell?) which doesn't seem healthy... > library(pixmap) > x <- pixmapIndexed(rep(1:8, 9), nrow=6, col=rainbow(8)) > x Pixmap image Type : pixmapIndexed Size : 6x12 Resolution : 1x1

Hello list, despite I already posted a mail on this topic on R help, I guess this place may be more appropriate. I'll make it shorter this time. Sorry for posting twice. I found that using pixmap pictures in a Sweave document was sometimes almost impossible, due to the huge size of the pdf pictures produced. The first solution I found was to save pictures in png, when too heavy in pdf.

Hi I need to overlay two pixmaps (library (pixmap)). One, a pixmapGrey, is the basis, and on this I need to overlay a pixmapIndexed, BUT: the pixmapIndexed has set only some of its "pixels" to an indexed color, many of its pixels should not cover the basis pixmapGrey pixel, means, for this "in pixmapIndexed not defined pixels" it should be transparent. What would you

Hi R, I wanted to know how do we access the elements of a list. In particular, v=list(c(1,2,3,4,5),c(1,2,33,4,5),c(1,2,333,4,5),c(1,2,3333,4,5)) I want to access all the thirds items of the elements of the list. i.e., I want to access the elements, 3,33,333,3333. This can be done through sapply as: sapply(v,function(x) x[3]) But I need to access this without using

Dear R developers, I am having a slightly weird issue with a S4 method defined in my package adegenet 1.2-4, with R 2.11.0. As far as I know, the problem is new, and the code implementing the method has not changed for more than a year and worked well so far. The problem is the following. I define, in the package, a method "[" for the S4 class 'genind'. The method's

I get tables with millions of rows. For plotting to a screen-size jpg, obviously just about 1000 points are enough. Instead of feeding plot() the original millions of rows, I'd rather shrink the original dataframe, using some kind of the following interpolation: -- split dataframe into chunks of N rows each, e.g. 1000 rows each -- compute average for each column -- issue one new row

Hello list, Here is a problem I had. I write this to the list in case the solution I found would be useful to anyone else. I had to Sweave document including pixmap pictures, which are very heavy when converted into pdf pictures. In practice, this eventually led to very heavy pdf, sometimes impossible to read. So the first solution I found was to save pictures in png, when too heavy in pdf :

Dear R-help, I would like to include the documentation of an R function in an *.rnw document processed by Sweave. Because I'm sharing my *.rnw files with colleagues under Linux and Windows (I'm on Mac OS X), I would like a pure R solution. The naive approach doesn't work, because Sweaving this *.rnw file: -------- tmp.rnw -------- \documentclass{article} \begin{document}

Dear all, It is my understanding that using 'importFrom' in the NAMESPACE of a package allows to avoid conflicts between different packages defining objects with identical names. However, I can still see conflicts while loading the package using 'library'. Here is a toy example, with a package 'foo' importing 'as.igraph' from the igraph package, and 'nj'

Hello, Here is a late answer, but an answer nonetheless to the question I asked almost one year ago on this list: > On Wed, 29 Mar 2006, Thibaut Jombart wrote: >> Hello list, <http://tolstoy.newcastle.edu.au/R/help/06/03/24318.html#24322qlink1> />> / />> does anyone know if Monmonier algorithm is available in R? I've checked / />> several spatial

Hi, I would like to plot a graph which sits in the background as a watermark with other plots in the foreground - on top. I have looked through the threads on the r-project website but they seem to concern background colours rather than actual background plots. I have also searched through the demo's and pars but can't find any eg's any ideas - I only want to plot a simple graph

Hi, I am trying to calculate Moran's I test for the residuals for a regression equation, but I have trouble converting my coordinates into nb format. I have used the dnearneigh() funtion now with an arbitrarily high upper distance to make it include all plots. However, when I do the lm.morantest() I get a Moran's I value which is the same as the expected value and a P-value of 1. I

Hi, I am a new student to R and I was hoping someone could help me with the error message I keep getting when I try to use the nb2listw() function. I have 45 sites and I want to get an autocorrelation value for sites within 1000m of each other. coords<-cbind(EAST,NORTH) coords<-as.matrix(coords) nb1000<-dnearneigh(coords,0,1000,longlat=TRUE) then when I try to run the