similar to: method dispatch conflict?

Hi, I've begun to use the lme4 package, rather than nlme, for more flexibility during modelling, and running the examples in lmer I receive this error message: ---<---------------cut here---------------start-------------->--- R> (fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy)) Error in printMer(object) : no slot of name "status" for this object of class

I have followed the instructions on how to build a Windows package and everything seems to work EXCEPT that I can't see the data files that I have loaded into the data directory. I have placed the appropriate data in the data directory (as in the instructions). There are 3 data sets, which I can see when I use the command in R. Details below. I have searched everywhere to try to fix this, but

Hi, I've noticed an issue with S4 methods and namespaces which only arises in particular, difficult to reproduce configurations. One example is the ggbio package in Bioconductor, which currently emits these warnings when its namespace is loaded: ---------------------- library(ggbio) Loading required package: ggplot2 Attaching package: ‘ggbio’ The following object(s) are masked from

Full_Name: Dale Barr Version: 2.5.1 (patched) OS: Ubuntu linux x86_64 Submission from: (NULL) (138.23.70.108) When RMySQL is loaded in before lme4, the summary() function for lmer objects in the lme4 packages produces the following error: Error in printMer(object) : no slot of name "status" for this object of class "table" When RMySQL is loaded AFTER lme4, however, no such

Hi all, I have a problem with a package that imports two other packages which both export a method for the `[` primitive function. I set up a reproducible example here: https://github.com/kforner/namespaceImportFrom_problem.git Basically, the testPrimitiveImport package imports testPrimitiveExport1 and testPrimitiveExport2, which both export a S4 class and a `[` method for the class. Then: R

Hi, further down from the problem I asked about yesterday I encounter the following problem (please appologize for the lengthy mail - I have not found a brief example making the issue clear): - using R packages making use of namespaces & - S4 classes when using --with-package-versions in the install call: Pkgs install ok and the first pkg 'base' can be loaded in R

I assigned a class the first problem in Pinheiro & Bates, which uses the data set PBIB from the SASmixed package. I have recently downloaded 2.0.1 and its associated packages. On trying library(SASmixed) data(PBIB) library(nlme) plot(PBIB) I get a warning message Warning message: replacing previous import: coef in: namespaceImportFrom(self, asNamespace(ns)) after library(nlme) and a

Dear members, I can't install "nser" package. It is not in cran but install_version and install_github both are not working: > install_version("nser",version = "1.4.0") Downloading package from url: https://cran.rstudio.com//src/contrib/Archive/nser/nser_1.4.0.tar.gz These packages have more recent versions available. It is

I'm running Mclust 3.0 in R-2.7.0 and have run into a situation where the optimal number of clusters, 12, seems to be greater than the number of colors available to Mclust. The code below, which demonstrates errors, does not if the max no of clusters is set at 10. sessionInfo, after a restart of R and loading of packages, follows the output. Is this a known problem with Mclust? Can I

Dear list, It seems that a package (pkgB) using another package (pkgA) with S4 generics formed by taking existing functions (for example 'plot') must not import the existing functions ('plot') in its namespace to avoid the warning "replacing previous import: plot". Suppose we use the simple 'import' directive in the name space of pkgB. pkgA and pkgB files would

It says that nser requires the most recent version of magrittr that you do not have installed. You must update magrittr before attempting to install nser: update.packages(oldPkgs = "magrittr") or at the prompt you were presented before, choose to update magrittr before installing nser. On Sun, Apr 9, 2023, 17:55 akshay kulkarni <akshay_e4 at hotmail.com> wrote: > Dear

Hello there, I am having trouble installing R-2.6.1 on GNU/linux. Here is how I configure and run it: ./configure --with-x=no --enable-R-shlib make The configure step is uneventful, the tail end of make follows. Does anyone have any experience with that? Thanks a lot in advance for any suggestions. gcc -std=gnu99 -shared -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o

I encounter such problem with lmer under FreeBSD, but not under Windows. Anyone knows why? Thanks. > example(lmer) lmer> (fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy)) Error in UseMethod("as.logical") : no applicable method for "as.logical" > traceback() 9: as.logical(EMverbose) 8: as.logical(EMverbose) 7: lmerControl() 6:

Hi, Using the following simple character vector representing a time series with fractional seconds: datetime <- c("20/09/2011 13:00:59.00", "20/09/2011 13:00:59.02", "20/09/2011 13:00:59.04") Conversion to POSIXct runs into problems; the second element is not interpreted correctly: ---<--------------------cut

Hi, Could someone explain what this message mean? I was playing with lme4 pacakge but I could not run any models... Error in printMer(object) : no slot of name "dims" for this object of class "table" In addition: Warning message: In printMer(object) : trying to get slot "dims" from an object (class "table") that is not an S4 object

Hi, namespaceImportFrom in base/R/namespace.R has the following: fdef <- methods:::getGeneric(genName, impenv) The definition of getGeneric is in methods/R/RMethodUtils.R starts with: getGeneric <- ## return the definition of the function named f as a generic. ## ## If there is no definition, throws an error or returns ## NULL according to the value of

I am trying to determine how to customize the date and time display of system utilities and user programs using the locale settings. What I really want is some sort of utility program that does the same thing for CentOS as the Regions Settings Control Panel app. for MicroSoft Windows accomplishes, but I have no hope of seeing that. I have traced the login locale processing through /etc/profile

Can someone tell me what an object of class lm returned by lm means? I assumed it mean the regression model - but I'm not sure how to enter this in. I have tried y~a+b but this is not working. I have also tried saving the regression results and entering these, but again this is incorrect. This language is from the following: lm.LMtests(model, listw, zero.policy=FALSE,

On Mon, 14 Jan 2019 16:27:04 -0500 Gilbert Soucy <gsoucy at 36pix.com> wrote: > Yes, I have tried testparam. All is OK . Note that I can write > anything for unix charset and testparm does not complain. > > Load smb config files from /etc/samba/smb.conf > rlimit_max: increasing rlimit_max (1024) to minimum Windows limit > (16384) Processing section

Hi, I have a script I can run step by step through the R interpreter and it works fine. I then run as a shell script with Rscript and it fails. The error message comes when I am creating a model matrix with model.matrix.default(). Error in `contrasts<-`(`*tmp*`, value = "contr.Treatment") : could not find function "is" Calls: model.matrix.default ->