similar to: crash in library(gbm) was: Rscript temp file

Hi, It seems that Rscript creates a temporary file to store the commands passed with the -e option, under normal circumstances the temp file gets deleted at some point. Here is an example of a call I use: q:/R/R-2.6.1/bin/Rscript.exe -e ".libPaths(\"q:/R/vogranovich/library\"); params <- list(a=1); source(foo)" The temp files seem to be a problem when multiple jobs are

Hi, I am debugging intermittent crashes of R that seem to happen when multiple R sessions nearly summaltaneously load same dll-based library. I have R and my libraries installed on a network drive (everything is Windows). The drive is visible from a farm of servers. I have an R script, foo.R, that just loads a dll-based library (to be precise it loads a library that requires a dll-based

Hi, I seem to have a problem when passing named parameters to R via Rscript (R2.5.1, bash shell). As soon as I name elements of a list Rscript generates an error. I will appreciate if someone could point to me a correct way of doing this. Thanks, Vadim ## This works bash-3.2$ Rscript.exe -e 'list(1)' [[1]] [1] 1 # and these do not work bash-3.2$ Rscript.exe -e

Dear R-devel, I installed R-2.9.1 on the 'y:' drive which happens to be mounted to an IBRIX file system. I also downloaded and installed the Rtools bundle recommended for 2.9x. When I build a source package launching R via RGui.exe it seems to work fine: ## setting path according to "Appendix E The Windows toolset" >

Dear R-users, Suppose I have an expression: expr = expression(a>0) and now I want to modify it to expression(a>0 & b>0). The following doesn't work: expr = expression(expr & b>0) What would be a good way of doing this? Thanks, Vadim ________________________________ Note: This email is for the confidential use of the named addressee(s) only and may contain

Dear R-users, I am trying to write a wrapper function around save() that will report the file which is being saved to. So I thought that the followintg would do the trick, but it doesn't. I understand that 'y' is somehow not visible inside save.verbose, but don't know how to fix this. save.verbose <- function(..., file) { cat("save.verbose:", file, "\n")

Dear gbm users, When running predict.gbm() on a "large" dataset (150,000 rows, 300 columns, 500 trees), I notice that the memory used by R grows beyond reasonable limits. My 14GB of RAM are often not sufficient. I am interpreting this as a memory leak since there should be no reason to expand memory needs once the data are loaded and passed to predict.gbm() ? Running R version 2.9.2 on

Dear all, the help file for predict.gbm states that "The predictions from gbm do not include the offset term. The user may add the value of the offset to the predicted value if desired." I am just not sure how exactly, especially for a Poisson model, where I believe the offset is multiplicative ? For example: library(MASS) fit1 <- glm(Claims ~ District + Group + Age +

Dear R-devel, Is there a reason that lapply(NULL, ...) returns the empty list, rather than NULL? It seems intuitive to expect the latter, and rather counterintuitive that lapply(list(), ... ) returns the same value as lapply(NULL, ...). > lapply(list(), function(x) 1) list() > lapply(NULL, function(x) 1) list() > version _ platform i386-pc-mingw32 arch

Dear R Users, Given two vectors, say a = seq(2) and b = seq(3), I want to make an 2*3 array, where (i,j) element is list(a=a[i], b=b[j]). I tried the outer() function but it generates an error message that I don't understand, see below. What do I do wrong? The expan.grid function is not good enough since I need a solution that works when a and b are not atomic, say a=list(list(x=1,

Dear R-devel, The median() function assigns a name, "NA", to its return value if the return value is NA and the input vector has names, otherwise the names attribute is NULL. This looks strange and inconsistent with the behavior of mean(). This inconsistency becomes a problem when median() is used inside user code that relies on consistent naming convention. Thanks, Vadim > foo

Hi, One way of doing object-oriented programming in R is to use function environment to hold object's data, see for example @Article{Rnews:Chambers+Lang:2001a, author = {John M. Chambers and Duncan Temple Lang}, title = {Object-Oriented Programming in {R}}, journal = {R News}, year = 2001, volume = 1, number = 3, pages = {17--19},

Good afternoon Has anyone tried using Dr. Elith's BRT script? I cannot seem to run gbm.step from the installed gbm package. Is it something external to gbm? When I run the script itself <- gbm.step(data=model.data, gbm.x = colx:coly, gbm.y = colz, family = "bernoulli", tree.complexity = 5, learning.rate = 0.01, bag.fraction = 0.5) ... I

Hi, I have a geforce 4mx 440 agp 8x, and I'm trying to use the GBM library, (as jbarnes in: http://virtuousgeek.org/blog/index.php/jbarnes/2011/10/ and David Hermann in KMSCON: https://github.com/dvdhrm/kmscon), without success. when I try to create a gbm_device, I get: (below the code.) nouveau_drm_screen_create: unknown chipset nv18 dri_init_screen_helper: failed to create pipe_screen

I'm attempting to fit boosted regression trees to a censored response using IPCW weighting. I've implemented this through two libraries, mboost and gbm, which I believe should yield models that would perform comparably. This, however, is not the case - mboost performs much better. This seems odd. This issue is meaningful since the output of this regression needs to be implemented in a

Hi, there: I am always experiencing the scalability of some R packages. This time, I am trying gbm to do adaboosting on my project. Initially I tried to grow trees by using rpart on a dataset with 200 variables and 30,000 observations. Now, I am thinking if I can apply adaboosting on it. I am wondering if here is anyone who did a similar thing before and can provide some sample codes. Also any

 Hello   I have questions about gbm package.  It seems we have to devide data to two part (training set and test set) for first.   1- trainig set for running of gbm function 2- test set for gbm.perf      is it rigth? I have 123 sample that I devided 100 for trainig and 23 for test.   So, parameter of cv.folds in gbm function is for what?   Thanks alot Azam       [[alternative HTML

I'm running R 2.11.1 on 64 bit Debian. I've had no problem installing any other CRAN packages, but installing package "gbm" fails due to: *** installing help indices ** building package indices ... ** testing if installed package can be loaded Error : .onAttach failed in attachNamespace() for 'gbm', details: call: NULL error: 'packageVersion' is not an

I recently use gbm for a binary classification problem. As expected, it gets very good results, based on Area under ROC with 7-fold cross validation. However, the application (malware detection) is cost-sensitive, getting a FP (classify a clean sample as a dirty one) is much worse than getting a FN (miss a dirty sample). I would like to tune the gbm model biased to very low FP rate. For this

Hello LIST, I'd like to use tune from e1071 to do a grid search for hyperparameter values in gbm. However, I can not get this to work. I note that there is no wrapper for gbm but that it is possible to use non-wrapped functions (like lm) without problem. Here's a snippet of code to illustrate. > data(mtcars) obj <- >