similar to: Perils of R_LIBRARY_PATH

Has anyone successfully installed rJava on Debian squeeze (or any other version of linux)? I keep getting the ... (JDK) is missing or not registered in R error message when installing the package. I've tried running 'R CMD javareconf', setting JAVA_HOME and editing /etc/R/ldpaths by hand, but to no avail. The problem might be related to the R_JAVA_LD_LIBRARY_PATH that's

In production I''ve setup a mongrel cluster of 2 servers. Now I''m using RJB(ruby java bridge). So I need certain java environment variables set before mongrel starts. So I set them: export LD_LIBRARY_PATH=/usr/java/jdk1.6.0/jre/lib/i386/:/usr/java/jdk1.6.0/jre/lib/i386/client/:./ export JAVA_HOME=/usr/java/jdk1.6.0/ Then I run "mongrel_rails cluster::start". Now

Hello! I'm trying to install R-3.0.1 on an Ubuntu machine (64 bit, version 13.04). I have uninstalled and installed several times, but to no avail. I keep getting errors about missing ldpaths, and installing packages does not work at all. Here is the information: erin@erin-Lenovo-IdeaPad-Y480:~$ sudo apt-get install r-base Reading package lists... Done Building dependency tree Reading

Installing rJava fails consistently, whether installed via the command line as below, or through "install.packages( 'rJava' )", and whether 0.84 or 0.85 is used, with the message :- "checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to

Trying to install Rjava on FreeBSD 9 and am getting the following error: > install.packages('rJava') trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/rJava_0.9-3.tar.gz' Content type 'application/x-gzip' length 537153 bytes (524 Kb) opened URL ================================================== downloaded 524 Kb * installing *source* package 'rJava' ... **

Hi there I am setting up a FreeBSD server for my research department at university, and one of my teachers needs specifically R modules like tm, RWeka, rJava and the like. I have installed FreeBSD 8.0/i386 and applied the relevant security patches as well as the native FreeBSD JDK 1.6 with its latest patchset. I have installed R 2.11 and enabled Java support on it. Now, when trying to install

Hi! I?m on macOS 10.13.3 and just installed the new Java 10 using Homebrew Cask. I also have installed R with Homebrew. Everything seems to work fine, however I just get different outputs if I run sudo R CMD javareconf or R CMD javareconf. With sudo I get pointed to Java 9 and without sudo I get pointed to Java 10. I really don?t know why. Without sudo: $ R CMD javareconf

I am not a Mac user, but I do use Linux and I would recommend not running R with sudo unless you are an admin ninja. That defensive practice would render the answer to your question moot. It is possible that your problem may have started with inappropriate use of sudo in configuring java, but configuring Java is not on-topic here. -- Sent from my phone. Please excuse my brevity. On March 27,

Hi Jeff!! I really don?t know if running R CMD javareconf with sudo has posed a problem here, now or in the past. What I know is sometimes it?s the only way to really config it, if I don?t run with sudo, in the end it asks me if I want to overwrite the configuration from root override rw-r--r-- root/admin for /usr/local/Cellar/r/3.4.4/lib/R/etc/Makeconf? (y/n [n]) y override rw-r--r--

On Wed, 20 Apr 2016 20:50:57 +0000 "Ellen K" <keyes at pushyes.xyz> wrote: > From: "Ellen K" <keyes at pushyes.xyz> > To: cireyapmin at gmail.com > Subject: RE: [R-sig-Fedora] Cannot Run On The Command Line > Date: Wed, 20 Apr 2016 20:50:57 +0000 > X-Mailer: iPad Mail (12H143) > > Hi virgo, > > Thank you for your interest in the

Good afternoon, A strange one - library(rJava) works for root but not for user sean On 64-bit Ubuntu 9.10, using R as root (sudo -i), I can say library(rJava) and it works fine with no error message of any kind. But logged in as myself user "sean", it can't start... sean at SeansPC:~$ R --no-save --vanilla R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for

Apologies in advance for the long post. I'm currently using a Makefile to build my shared library. Pursuant to the R-exts manual, I'd like to switch to a Makevars file or a configure file if necessary. Having never used these types of make utilities before, I'm a bit lost. My package is quite simple. It only has one source file and one header: excelpoi.cpp excelpoi.h The reason I

Hello , There is a way to source /etc/profile inside puppet on demand? My problem is that I install Java, afterwards I set JAVA_HOME variable in /etc/profile. After Java is installed, a gem which depends on Java starts to install ... but as it needs JAVA_HOME environment to be set, it fails. I am not sure what can I do ... Thank you, Adrian -- You received this message because you are

Hi All, I am trying to run a java based communication client developed for winidows to run on Ubuntu/Wine. First I tried installing the app without having JRE under Wine, it halted with an error while installing JRE. So, I installed JRE separately under wine and then the application. It installed correctly. Now, when I run the application, it starts (I can see it under the process list) and

Hi all, I am new to Xapian and want to use it with Java. In order to do that I tried to compile the Java bindings. I set XAPIAN_CONFIG and invoked "configure". However "./configure --with-java" exits with an error. Point of failure: checking for jni.h... no checking for jni.h in /usr/lib/jvm/java-1.5.0-sun/include... no checking for jni.h in

Hi, I use Redhat Linux for R. Now I am trying to use the rJava library. I downloaded JRE beta 2 from Sun. I typed root@~]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0-beta2 Java home path : /usr/java/jre1.6.0 Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64::/usr/java/packages/lib/amd64:/lib:/usr/lib JNI linker

Hello Everyone, After trying several ways to compile R 3.2.2 without luck, I?m reaching out for help. The ?make check? does not hanges for some reason and when trying to install a package it cannot list the download sites (see below). What could be the problem? ./configure --enable-R-shlib --enable-BLAS-shlib hostname = test uname -m = x86_64 uname -r = 2.6.32-573.7.1.el6.x86_64 uname -s =

Hi, I would like to test the new package RGG (R Gui Generator). This package requires the installation of several other package. One of them is rJava. I installed sun-java6-jdk and run the R CMD javareconf but the installation still fails ! Do you have any ideas ? * Installing *source* package ‘rJava’ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file

Before I do that, I would need to remove the gcj stuff that are in /usr/bin. If I know how to remove gcj, I'd gladly do that. However, for the particular version of the OS, the entire GCC seems to be bundled into one rpm, and I could not remove just the gcj component. Neither do I wish to mess with files that are part of some RPMs--- in my experience that's invitation for trouble later.

Hi all, I downloaded and installed JGR. Then when I tried to load the package in R console, it generated the following error message: > local({pkg <- select.list(sort(.packages(all.available = TRUE))) + if(nchar(pkg)) library(pkg, character.only=TRUE)}) Loading required package: rJava using Java Runtime version 1.5.0 using JAVA_HOME = C:\Program Files\Java\jre1.5.0_01 Loading required