Displaying 20 results from an estimated 4000 matches similar to: "R valgrind question"
2007 Jul 13
0
KWD crashes when opening OOo
Hello,
KWD crashes almost regularly when trying to start OpenOffice.org. I've
attached two output files from valgrind to this e-mail (as suggested by David
Reveman in another mail 11.7):
Use something like:
valgrind --tool=memcheck kde-window-decorator ....
I'm using Trevino's git version of Compiz in up-to-date Kubuntu Feisty system.
Compiz version is
2014 Mar 17
1
valgrind and C++
Hi,
I am sorry if this is perceived as a C++ question rather than an R
question. After uploading an R library to CRAN (MCMCglmm) the C++ code
failed to pass the memory checks. The errors come in pairs like:
Mismatched free() / delete / delete []
at 0x4A077E6: free (vg_replace_malloc.c:446)
by 0x144FA28E: MCMCglmm (MCMCglmm.cc:2184)
Address 0x129850c0 is 0 bytes inside a block of size 4
2018 Dec 03
3
Dovecot 2.3.4 crash
On 2 Dec 2018, at 22.22, Guillaume via dovecot <dovecot at dovecot.org> wrote:
>
> I also have this kind of segfault since the update :
>
> Dec 2 21:12:11 xxxxxxx dovecot: auth-worker: Error: *** Error in `dovecot/auth': double free or corruption (fasttop): 0x000055573bb99f70
Is this easy to reproduce? Can you try with valgrind? It will slow down the logins a bit though.
2019 Feb 27
2
Intermittent crashes with inset `[<-` command
Valgrind (without gctorture) reports memory misuse:
% R --debugger=valgrind --debugger-args="--leak-check=full --num-callers=18"
...
> x <- 1:200000
> y <- rep(letters[1:5], length(x) / 5L)
> for (i in 1:1000) {
+ # x[y == 'a'] <- x[y == 'b']
+ x <- `[<-`(x, y == 'a', x[y == 'b'])
+ cat(i, '')
+ }
1 2 3 4 5 6 7 8 9 10
2019 Feb 26
8
Intermittent crashes with inset `[<-` command
The following code crashes after about 300 iterations on my?x86_64-w64-mingw32?machine on R 3.5.2 --vanilla.??
Others have duplicated this (see?https://github.com/tidyverse/magrittr/issues/190?if necessary), but I don't know how machine/OS-dependent it may be.??
If it doesn't crash for you, please try increasing the length of the x vector.
Substituting the commented-out line for the one
2009 Feb 20
2
segfault on amd64 with ffmpeg
Hi,
and thank to you all for this great codec !
I have this bug on Debian Lenny with compiled packages of last svn versions of
ffmpeg and libtheora. This seems to append only on the amd64 arch. Here is a
valgrind log :
pre-barreau at augustins:~/video$ export LD_LIBRARY_PATH=/usr/local/lib
pre-barreau at augustins:~/video$ valgrind
/home/pub/apps/ffmpeg_dev/ffmpeg_svn/ffmpeg -i
2008 Dec 10
2
assert with zlib and (maybe) fts
Hi,
I compressed a folder with the following script:
...
for i in *.*.*; do
file $i | grep bzip2 >/dev/null 2>&1
if [ $? -ne 0 ]; then
echo "Compress: $i"
cat "$i" | bzip2 -9 > ../tmp/$i
if [ $? -eq 0 ]; then
mv ../tmp/$i $i
fi
else
2011 Feb 24
2
[LLVMdev] Valgrind memcheck errors in llvm
I have ran under valgrind memcheck the process using libLLVM-2.9.so
(rev.126022) and got several errors:
==24227== Invalid read of size 1
==24227== at 0x40274C9: memcpy (mc_replace_strmem.c:497)
==24227== by 0x40D5B84: char* std::string::_S_construct<char
const*>(char const*, char const*, std::allocator<char> const&,
std::forward_iterator_tag) (in
2013 May 30
2
[LLVMdev] unexpectedly loop hanging
Hello Duncan,
Thank you for your quick answer. I use the standard Makefile from a pass,
that is calling Makefile.common. I saw only the make -d option, that "*print
lots of debugging information*", as mentioned by LLVM.
Using this, valgrind don't tell me extra info. It is a very good idea ti
use -g, but where to insert? If I am trying to use clang++, I have to fix a
lot of things.
2004 Feb 04
0
RE: RE: winbindd panic daemon dies
Hi Samba developer people,
I still have a problem were winbindd panics every time I run it. I'd hoped this might get fixed as newer releases of Samba came out, but I'm now running 3.0.2pre1 and still the same problem. I want to deploy Samba on Solaris, but was unable to successfully get samba to compile with dmalloc support, so I've had to install onto RedHat 8 and use valgrind
2013 May 30
0
[LLVMdev] unexpectedly loop hanging
Hi Alexandru,
> /*==5134== Invalid write of size 4
> ==5134== at 0x4039280: (anonymous
> namespace)::Hello::runOnModule(llvm::Module&) (in
> /home/alex/llvm/Release+Asserts/lib/Hello.so)
> ==5134== by 0x8E33DE3: llvm::MPPassManager::runOnModule(llvm::Module&) (in
> /home/alex/llvm/Release+Asserts/bin/opt)
> ==5134== by 0x8E3726F:
2013 May 30
2
[LLVMdev] unexpectedly loop hanging
As an update, here is the current piece of code:
Inside a loop iterating over each basic block :
*std::vector<Value*> values;
values.resize(cnt);
//std::vector<Value*> values(sizeof(Value*)*cnt);
//SmallVector<Value*,cnt> values;
if(is)
{
LLVMContext& C = is->getContext();
errs()<<"\ni: \n";
for(i=0;i<cnt;i++){
2009 May 26
5
errors in valgrind
Hay!
Has anyone come across these errors using valgrind for the oggenc tool or the
encoder_example.c:
==13108== Invalid read of size 4
==13108== at 0x4155734: _vp_offset_and_mix (in
/usr/local/lib/libvorbis.so.0.4.1)
==13108==
2008 Jan 23
2
survey: estimating a covariance matrix
Hello
Does anybody happen to know if it is possible to use the survey package to
estimate a covariance matrix from a complex survey?
I have design weights and clusters (no strata), and want to get a covariance
matrix with preferably the effective sample size or else an estimate of the
variance-covariance matrix of the covariance matrix ("asymptotic covariance
matrix"). Is this
2013 May 30
0
[LLVMdev] unexpectedly loop hanging
Hi Alexandru, if these are LLVM Makefiles, then I suggest you configure and
build LLVM with the options:
--disable-optimized --enable-assertions
This will make debugging much easier. It enables debug info too, which you can
also turn on directly by configuring with --enable-debug-symbols.
Ciao, Duncan.
On 30/05/13 14:21, Alexandru Ionut Diaconescu wrote:
> Hello Duncan,
>
> Thank
2018 Mar 29
2
Possible `substr` bug in UTF-8 Corner Case
I think there is a memory bug in `substr` that is triggered by a UTF-8 corner case: an incomplete UTF-8 byte sequence at the end of a string.? With a valgrind level 2 instrumented build of R-devel I get:
> string <- "abc\xEE"??? # \xEE indicates the start of a 3 byte UTF-8 sequence
> Encoding(string) <- "UTF-8"
> substr(string, 1, 10)
==15375== Invalid read of
2012 May 07
3
[PATCH] Add missing functions to VorbisComment class + a few other things
Attached is a patch that adds 5 missing FLAC__metadata_object_vorbiscomment_* functions to the VorbisComment class. In my previous message I stated 8 functions were missing, but on closer inspection, 3 of those belong in the VorbisComment::Entry class, and 2 of them already have equivalent functions in there. The last one (FLAC__metadata_object_vorbiscomment_entry_matches()) does not, but I have
2008 Jan 02
2
INSTALL.in: Install R to local path?
Dear all,
I am trying to install R on a (Linux Debian) machine where I do not
have root access. So far I succeeded in compiling from source and
running R.
But I would really like to be able to use "make install" and to be
able to install certain packages such as foreign. Now these actions
require permissions for directories that I do not have.
In particular I would like R home to be
2007 Feb 08
1
supsmu(periodic=TRUE) can crash R by reading before start of array (PR#9502)
supsmu(periodic=TRUE) can crash R by reading before start of array.
To reproduce:
set.seed(1)
xx <- runif(29000)
yy <- rnorm(29000)
span <- 0.49
i <- 1
while(i < 200){
cat(i,"\n")
int <- supsmu(xx,yy,periodic=T,span=span)
i <-i+1
}
results in:
1
2
3
4
5
6
7
8
9
Program received signal SIGSEGV,
2010 Apr 13
2
.Fortran interface error
Hi all,
I'm preparing a package which uses .Fortran to interface a Fortran 95
function. This F95 function simply receives the name of a file from R,
opens this file and forwards its content to a F95 module, which, in turn,
makes the real computation. The F95 module is a pre-existing one and I'm
trying to use it in its actual state.
Thus, data transfer between R and this F95 module is