similar to: Re-attaching a package environment drops the attributes

Hi, Currently object.size() is not very useful on environments as it always returns 56 bytes, no matter how big the environment is: env1 <- new.env() object.size(env1) # 56 bytes env2 <- new.env(hash=TRUE, size=75000000L) object.size(env2) # 56 bytes env3 <- list2env(list(a=runif(25000000), L=LETTERS)) object.size(env3) # 56 bytes This makes it pretty useless on

Hi all, I'm searching for a little clarification on partial mantel tests (ecodist package) I've a distance matrix (x,y), and several others containing environmental/chemical variables. Based on the help file, and the package instructions I've managed to implement the tests as; var1 ~ env1 + space to partial out the effect of space and test the relationship between the

Move the interal static libraries as the last items in the list of libraries of guestfsd, to make sure their symbols are used for all the other libraries. This is because GCC resolves the symbols looking at the arguments from the beginning to the end of the command line. This currently does not cause failures, however it "just works" because of the tricky situation set up. The

I am only reporting this because it is the current release branch and not devel. R-2.13 from svn revision 55957 builds fine, but fails make check. This happened with a fresh svn checkout 12 hours ago and it still happens as of now. Two days ago I could build R-2.13 and it passed make check on the same system, so I doubt it is a system problem. But just in case my system details are a fresh

Hello, I'm trying to illustrate the relationships between various trait and environment data gathered from a number of sites. I've created a GAM to do this: gam1=gam(trait~s(env1)+s(env2)+te(env1,env2)) and I know how to create a 3D plot using vis.gam. I want to be able to show points on the 3D plot indicating the sites that the data came from. I can do this on a 2D plot when there is one

Hi, I have a MapReduce Java code, which I am calling from R using rJava. I have prepared the R package and tested that successfully. But when I deployed the package in a cluster and executed it, I am getting ClassNotFoundException. If I run the same job directly without integrating with R, it runs perfectly. Here is my R code: library(rJava) muMstSpark <- function(mesosMaster = NULL, input =

Hi, The added support for semi-transparent colours in `windows' under R-2.6.0 for Windows is much appreciated. However, I've discovered that issuing a `layout' (or `par' with arguments `mfcol'/`mfrow') call and then trying to plot several figures with semi-transparent colour on the same page results in only the first one being fully drawn. E.g. > x <-

On 14 October 2008 at 09:39, Simon Blomberg wrote: | Hi, is anyone else getting this error? Could this be a bug?: | | > update.packages(ask=FALSE) | Error in read.dcf(pkgpath, fields = fields) : | Line starting 'unix; ...' is malformed! | | > sessionInfo() | R version 2.8.0 RC (2008-10-12 r46696) | x86_64-pc-linux-gnu Confirmed in plain R using the same package built this

On 14 October 2008 at 09:39, Simon Blomberg wrote: | Hi, is anyone else getting this error? Could this be a bug?: | | > update.packages(ask=FALSE) | Error in read.dcf(pkgpath, fields = fields) : | Line starting 'unix; ...' is malformed! | | > sessionInfo() | R version 2.8.0 RC (2008-10-12 r46696) | x86_64-pc-linux-gnu Confirmed in plain R using the same package built this

Hi Gabe, On 09/29/2015 02:51 PM, Gabriel Becker wrote: > Herve, > > The problem then would be that for A a refClass whose fields take up N > bytes (in the sense that you mean), if we do > > B <- A > > A and B would look like the BOTH take up N bytes, for a total of 2N, > whereas AFAIK R would only be using ~ N + 2*56 bytes, right? Yes, but that's still a *much*

I am running into a problem with my LDAP puppet setup with this error message: PuppetClient: err: Could not retrieve catalog from remote server: Error 400 on SERVER: Could not parse for environment DR: undefined method `to_sym'' for ["ENV1", "ENV2"]:Array PuppetMaster: err: Could not parse for environment DR: undefined method `to_sym'' for ["ENV1",

Dear R users, I have just upgraded R v1.5.0 to v1.6.1 for Windows but have trouble loading my library of R only functions (no C calls). After examining the "library" script this difference was found: (v1.5.0) which.lib.loc <- dirname(pkgpath) descfile <- system.file("DESCRIPTION", package = package, lib.loc = which.lib.loc) if

Dear R-core devs, I hope this email finds you well. Please see the proposed patch to R-devel below: Scenario: When loading a package using `library`, a package may not be found if the cases are not matching: ``` > library(ORG.Hs.eg.db) Error in library(ORG.Hs.eg.db) : there is no package called 'ORG.Hs.eg.db' ``` Suggested Patch: Returns a message matching what

Hi, is anyone else getting this error? Could this be a bug?: > update.packages(ask=FALSE) Error in read.dcf(pkgpath, fields = fields) : Line starting 'unix; ...' is malformed! > sessionInfo() R version 2.8.0 RC (2008-10-12 r46696) x86_64-pc-linux-gnu locale:

Hello, I''m using the following expression to format a list: $valid_environments = [''env1'', ''env2'', ''env3''] $env_message = $valid_environments.reduce |$message, $env| { "${message}, ${env}" } It works at run-time (Puppet 3.2.4 standalone with "--parser=future"). However in Eclipse (v4.3.1),

Hi R Users, I created interaction plots in ggplot2 and was trying to add output of two way ANOVA models, especially only interaction ( example treatment*control F(XX, XX) = xxx, p = xxx) into figures, but i was not able to add. Would you mind to help on how I can add information into each figure? I have attached the example data and the code that I used for this. dat<-structure(list(Sites

Hi All, I have written a Java MapReduce code that runs on Hadoop. My intention is to create an R package which will call the Java code and execute the job. Hence, I have written a similar R function. But when I call this function from R terminal, the Hadoop job is not running. Its just printing few lines of warning messages and does nothing further. Here is the execution scenario: *>

With a pretty recent version of R 2.11.0 (devel,unstable, svn 50178) on Linux I could not install version 1.5-8 of zoo (the current on on CRAN): % R-devel CMD INSTALL -l Rlib3 zoo * installing *source* package 'zoo' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'zoo' finding

Hallo everybody. I want to build my own GO package using the function GOPkgBuilder of AnnBuilder. It uses AnnBuilderSourceUrls to collect data from different ftp sites. These data are not complete for my organism, so I would like to change the ftp adresses to a local one. The changing itself is working but when I run the script I get the following Error: Error in

Hi, just a little wish : Could we have one (or maybe more) standardized optional tag(s) for package DESCRIPTION files to cover svn revision info? This would be very useful for bug reporting... I know that any developer is already free to append corresponding lines to DESCRIPTION files to do something of this sort --- e.g. lines like LastChangedDate: {$LastChangedDate: 2009-03-31 $}