similar to: error message from lmer

Full_Name: Dale Barr Version: 2.5.1 (patched) OS: Ubuntu linux x86_64 Submission from: (NULL) (138.23.70.108) When RMySQL is loaded in before lme4, the summary() function for lmer objects in the lme4 packages produces the following error: Error in printMer(object) : no slot of name "status" for this object of class "table" When RMySQL is loaded AFTER lme4, however, no such

Hi, I vaguely recall this was discussed in the past, but I cannot remember the context. The code below shows the problem: ---<---------------cut here---------------start-------------->--- R> library(stats4) R> library(lme4) Loading required package: Matrix Attaching package: 'Matrix' The following object(s) are masked from package:stats : xtabs

Hi, Doing 'R CMD check diveMove' is now throwing this message: Data codoc mismatches from documentation object 'sealLocs': Variables in data frame 'sealLocs' Code: id.time.class.lon.lat Docs: class id lat lon time with: R> sessionInfo() R version 2.10.1 (2009-12-14) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C

Hi! I'm puzzled by the return value of ifelse consider x<-integer(0) ifelse(is(x, "character"), paste(x), x) [1] NA whereas if (is(x, "character")) return(paste(x)) else x [1] integer(0) or x<-integer(1) ifelse(is(x, "character"), paste(x), x) [1] 0 work as I had anticipated. Is this correct behaviour? Regards, Matthias >sessionInfo() R

Hi all, What are current methods people use in R to identify mis-spelled column names when selecting columns from a data frame? Alice Johnson recently tackled this issue (see [BioC] posting below). Due to a mis-spelled column name ("FileName" instead of "Filename") which produced no warning, Alice spent a fair amount of time tracking down this bug. With my fumbling fingers

Hi, Could someone explain what this message mean? I was playing with lme4 pacakge but I could not run any models... Error in printMer(object) : no slot of name "dims" for this object of class "table" In addition: Warning message: In printMer(object) : trying to get slot "dims" from an object (class "table") that is not an S4 object

I am trying, without success, to compile a custom locale for the utf-8 character set. I have issued this command: localedef --no-archive -f UTF-8 -i /usr/share/i18n/locales/en_CA at yyyy-mmm-dd en_CA at yyyy-mmm-dd.utf8 which produces the requisite files without reporting an error but which none-the-less insists on using the iso-8859-1 charset: LC_ALL=en_CA at yyyy-mm-dd locale charmap

Hi, The following call: xyplot(incidence ~ year, melanoma, panel=panel.smooth) produces a blank plot region with an error message: Error using packet 1 plot.new has not been called yet > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=C

I saw it also on some of my Ubuntu builds, but the issue went away after a make clean/make, so maybe give that a try. Best, luke On Wed, 24 Apr 2024, Ben Bolker wrote: > I'm using bleeding-edge R-devel, so maybe my build is weird. Can anyone > else reproduce this? > > View() seems to crash on just about anything. > > View(1:3) > *** stack smashing detected ***:

Hello, Suppose we need a function that takes a POSIXct object and need to calculate the time difference between it and GMT time: gmtDiff <- function(time) { time.gmt <- as.POSIXct(format(time, tz="GMT")) time.plt <- as.POSIXlt(time) dlstime <- ifelse(time.plt$isdst > 0, 1, 0) timezone <- as.numeric(difftime(time, time.gmt, units="hours"))

Hi, x <- c(rep(1800000003L, 10000000), -rep(1200000002L, 15000000)) This is correct: > sum(as.double(x)) [1] 0 This is not: > sum(x) [1] 4996000 Returning NA (with a warning) would also be acceptable for the latter. That would make it consistent with cumsum(x): > cumsum(x)[length(x)] [1] NA Warning message: Integer overflow in 'cumsum'; use

Hi, I can't pinpoint exactly since what R version I first noticed this error, but are others seeing this? R> vignette("grid") R> sh: : command not found instead of having the vignette displayed in the proper viewer? This is with: R> sessionInfo() R version 2.9.2 (2009-08-24) x86_64-pc-linux-gnu locale:

Hi, After the latest update of r-cran-* packages in sid, I'm getting the following message on startup: During startup - Warning message: package 'lattice' was built under R version 2.9.2 and help may not work correctly I haven't found anything wrong with the package's functionality so far though. ---<--------------------cut

Hi, I'm getting a segmentation fault as follows: ---<--------------------cut here---------------start------------------->--- R> begt <- as.POSIXct(strptime("10/01/2009 06:00:00", format="%d/%m/%Y %H:%M:%S"), + tz="GMT") R> tser <- seq(begt, by=5, length.out=91000) R> tser.trunc <- format(tser) Error: segfault from C

Hi, With current R devel and R 2.13.1: > aa=1:5 > save(aa, file="aa.rda", compress="xy") Error in identical(compress, "gzip") || compress : invalid 'y' type in 'x || y' Thanks! H. > sessionInfo() R version 2.13.1 (2011-07-08) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C [3]

Dear all, I am running R 2.8.1. under ubuntu, and I need to install the package "raster" but I get the following error: > install.packages("raster") Warning in install.packages("raster") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done

Hi, This looks OK: > x <- c("_1_", "1_9", "2_9") > rank(x) [1] 1 2 3 But this does not: > xa <- paste(x, "a", sep="") > xa [1] "_1_a" "1_9a" "2_9a" > rank(xa) [1] 2 1 3 Cheers, H. > sessionInfo() R version 2.14.0 (2011-10-31) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1]

Hi, Using the following simple character vector representing a time series with fractional seconds: datetime <- c("20/09/2011 13:00:59.00", "20/09/2011 13:00:59.02", "20/09/2011 13:00:59.04") Conversion to POSIXct runs into problems; the second element is not interpreted correctly: ---<--------------------cut

Hi, The pdf function would not let me change the paper size and gives me the following warning: pdf("figure.pdf", width="6", height="10") Warning message: ?mode(width)? and ?mode(height)? differ between new and previous ==> NOT changing ?width? & ?height? If I use the option paper = "a4r", it does not give me a warning but still prints on a

There is still issues with the reversed y-log scale plot: # Test case A: works as expected plot(10:100,log="y",ylim=c(100,11)) grid() par("yaxp") # Test case B: grid does not have horizontal lines; par("yaxp") is different plot(1:100,log="y",ylim=c(100,10)) grid() par("yaxp") In the second test case, axTicks for the horizontal lines (in