similar to: Embedding R and registering routines

Dear list, I am trying to implement a publish-subscribe mechanism in for an embedded R interpreter. But somehow my registered closures seem to get collected by the GC, even though I have protected them. I have reducted my code to the following sample. Sorry if it is a little verbose. The first couple of call of calls still work, but at some point one of the callbacks (callback1 in my

Hello folks, I'm embarking on a project to embed R into the Apache web server, and I'd like your help. Currently, I'm looking for a way for R code to call back into a shared library from which the R shared library was loaded. Essentially, apache starts and loads mod_R.so which runs an initialization routine which calls Rf_initEmbeddedR() and the following code: /* override to

Hi, I'm trying to register my native routines using R_registerRoutines (...). I can compile the code, but the loader cannot resolve the symbol: undefined symbol: _Z18R_registerRoutinesP8_DllInfoPK12R_CMethodDefPK15R_CallMethodDefS3_S6 _ $ nm bgx.Rcheck/bgx/libs/bgx.so | grep R_registerRoutines U _Z18R_registerRoutinesP8_DllInfoPK12R_CMethodDefPK15R_CallMethodDefS3_S6

dear r-community, currently i have a workflow as following: data in online-MYSQL-database via .csv into R for analysis, results back to mysql. generating graphics for reports also. that's ok, but i need some process-optimization. i'd like to run r directly on the webserver. analysis should work automatically, after the appropriate r-script was selected in a browser-gui for R. until

Hello, I need a bit of handholding with R, specifically, with writing packages for it. I'm a systems programmer, and am, on the request of several users of our software, working on generating R interfaces. For starters, I've written the following R function (which compiles): SEXP myincr(SEXP Rinput) { // Returns input integer incremented by one int input; SEXP returner; PROTECT(Rinput =

Hi all I was trying to isntall RApache last week but ran into strnge problems that no one else seems to be experiencing. At least I couldn't find anything after extensive googling. First off, the machine I'm installing on looks like this: Dell Optiplex 745 32 bit 2GB RAM Fedora 15 httpd -v Server version: Apache/2.2.21 (Unix) Server built: Sep 13 2011 13:46:23 R: R-2.14.0-3.fc15.i686

I installed mod_r according to the specifications, and have been trying to get the demo script to work correctly. I am running debian, the latest build of R, apache 2 with prefork mpm, and the latest mod_r. Is anyone else using this module successfully? I added: LoadModule R_module mod_R.so <Location /test/hello> SetHandler r-handler Rsource /var/www/html/test.R RreqHandler

Hello, I'm evaluating this expression expression({ for(x in 1:5){ .Call('rh_status','x') }}) a million times from a program with R embedded in it. I have attached reproducible code that crashes with Program received signal SIGSEGV, Segmentation fault. 0x00002b499ca40a6e in R_gc_internal (size_needed=0) at memory.c:1309 1309 FORWARD_NODE(R_PPStack[i]); Current language:

Hi, Who should I ask about my package Rigroup_0.83 being moved to Archive status on CRAN and no longer available via install.package? I have no problems with the move if this was simply because of low demand. However, if there was a build issue with the newest releases that caused problems, I would be happy to address it. I'll just ask my students to install it from my own locally hosted

What is it? ----------- mod_R is a project dedicated to embedding the R interpreter inside the Apache 2.0 (and beyond) web server for the purpose of writing web applications in R. It's composed of three parts: mod_R: the Apache 2.0 module that implements the glue to load the R interpreter. RApache: the R package that provides the API for programming web applications

What is it? ----------- mod_R is a project dedicated to embedding the R interpreter inside the Apache 2.0 (and beyond) web server for the purpose of writing web applications in R. It's composed of three parts: mod_R: the Apache 2.0 module that implements the glue to load the R interpreter. RApache: the R package that provides the API for programming web applications

Dear R List, I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions" that leads to a segmentation fault (tested on windows and mac os x). The registration mechanism for ".C" routines via R_registerRoutines and the R_CMethodDef structure has been enhanced recently with the addition of two fields, one

I am trying to set up a RApache server on my Ubuntu 8.04. I have installed apache2, R-2.7.0, and the RApache plugin. Both Apache and R seem to work fine, but whenever i try to use the plugin i get this error: C stack usage is too close to the limit. I have tried to recompile apache2, R, and RApache, but i keep getting the error. The weird thing is, i had exactly the same problem when i installed

Hi all, I need your opinion about using R-Rapache to build a knowlegde base to bioinformatics field. I have copious amount of genotype information (some few million records) and would like to store it in MySQL database. Then, using RMySQL connector I would like to use it for further analysis using R over a web interface. The web interface which I am thnking off, just does not serve the purose of

Hi, I'm using dyn.load to load a shared library (compiled from C code) into R. If I dyn.unload it and then dyn.load it again, I get an hourglass icon in Rgui (R 1.7.0, Win 2000), and it just sits there forever. I can't press Escape to stop the current computation, but I can close Rgui without resorting to using the Task Manager. Is it a problem with my use of R_alloc? Do I need

Hi, I've been tracking down a memory leak in an rApache application, http://data.vanderbilt.edu/rapache/bbplot. The code was deployed in 2007 and has survived numerous upgrades of both R and rApache (including upgrades and bugs in RMySQL). It's written in such a way so that web crawlers will download every possible URL the app will create. It's not a high-traffic app, but just about

Hi all; Now I'm developing web application by using rapache in ubuntu. My problem is that as users execute the application, the server PC cumulates memory. After users close or refresh the application page, the server PC memory is still cumulated. Now I'm renewing apache machine by manually in terminal. Is there any way to kill memory when users refresh or close the application page?

Has anyone had problems with Rapache that don't show up on command line execution of R? I just ran into this loading rgdal in Rapache page and having a problem with loading shared object. The final complaint was that Stop_XMLParser was undefined- this was surprising since grep -l showed it in expat lib and it worked fine from command line. Finally, I noted the search path had apache/lib ahead

Hi, this is Charlie and I am trying to embed R in my apache server. However, I am having problem with installation. The R projet says that we can install add-on package with command $R CMD (rapache.0.1.4.tar.gz). However, I try to use it in command windows (windows xp) and an error shows. Please tell me when I can use the command (in c?? or in the same folder with the file). thx. [[alternative

Dear ?useRs, Rook version 1.0-3 has been submitted to CRAN. In the mean time you can get it here: https://github.com/jeffreyhorner/rRack/blob/master/Rook_1.0-3.tar.gz The latest release contains support for deployment with rApache. Please see 3.6.5 and 3.6.6 under section 'Configuring rApache' in the manual: http://www.rapache.net/manual.html#Configuring_rapache What is Rook? A