similar to: Can't load XML_1.4-0.zip in last R devel

The Bioconductor build for a package DirichletMultinomial on R Under development (unstable) (2013-02-26 r62077) -- "Unsuffered Consequences" at http://bioconductor.org/checkResults/devel/bioc-LATEST/DirichletMultinomial/george2-buildsrc.html shows * creating vignettes ... ERROR ... Error: processing vignette ?DirichletMultinomial.Rnw? failed with diagnostics: chunk 21 (label

Hi, Trying to compile one of the latest snapshot tarballs of R-devel gives me the following error (64-bit openSUSE 10.3): ... make[2]: Entering directory `/loc/home/biocbuild/bbs-2.4-bioc/R/src/library/Recommended' make[2]: *** No rule to make target `VR.ts', needed by `stamp-recommended'. Stop. make[2]: Leaving directory

Hi, I created a package as follows: > a = 1 > package.skeleton() Then I got the following output when building the package: * checking for file ?anRpackage/DESCRIPTION? ... OK * preparing ?anRpackage?: * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a ?data/datalist?

Hi, Starting with the XML package installed: > "XML" %in% rownames(installed.packages()) [1] TRUE > I ran the following script: pkgs <- c("XML") for (i in 1:100) { install.packages(pkgs, repos="http://cran.fhcrc.org") if (!all(pkgs %in% rownames(installed.packages()))) { print("failed to install pkgs!")

Hi, I'm running into a case where byte-compilation changes the semantic of a function. This is with R 3.4.0: foo <- function(x) { TRUE && x } foo(c(a=FALSE)) # [1] FALSE # OK foo(c(a=TRUE)) # [1] TRUE # OK foo(c(a=FALSE)) # a # ???? # FALSE The 3rd call returned a result that it different from the 1st call! After

Hello, Man page for 'install.packages' says that if the 'lib' arg is missing, then it "defaults to '.libPaths()[1]' with a warning". But, given the 'install.packages' source code, it seems that this warning is issued only when 'length(.libPaths()) > 1'. So typically, this warning will appear on Mac OS X but not on a Linux or Windows systems

I downloaded: http://www.bioconductor.org/data/metaData/hgu95av2_1.7.0.tar.gz described as: Package: hgu95av2 Title: A data package containing annotation data for hgu95av2 Version: 1.7.0 Created: Wed Jan 12 16:57:23 2005 Author: Lin,Chenwei Description: Annotation data file for hgu95av2 assembled using data from public data repositories Maintainer:

Hi there, Is that change in R-devel intentional? library(Matrix) m <- as(matrix(c(0, 1)), "sparseMatrix") isS4(m) # [1] TRUE x <- I(m) # Warning message: # In `class<-`(x, unique.default(c("AsIs", oldClass(x)))) : # Setting class(x) to multiple strings ("AsIs", "dgCMatrix", ...); result will no longer be an S4 object

Hi, The current implementation for utils::tar() seems to generate broken tarballs when some of the files to include in the tarball are >= 2GB. For example, when running 'R CMD build' on a big Bioconductor data package, we see this warning: * checking for file ?ChIPXpressData/DESCRIPTION? ... OK * preparing ?ChIPXpressData?: * checking DESCRIPTION meta-information ... OK *

Full_Name: Brian K. Boonstra Version: 2.2.1 OS: WinXP, OSX Submission from: (NULL) (63.172.178.137) The maxdrawdown function in tseries defines the maximum drawdown in terms of absolute dollars (or whatever units the input is in). Industry convention is to do this in percentage terms. I have written the code below as maximumdrawdown(), which retains backward compatibility with the current

Hello, I'm seeing three different vignette-related errors with recent versions of R-3.0.0 alpha. First, with the package BitSeq (http://bioconductor.org/packages/2.12/bioc/html/BitSeq.html), I get the following when trying to build the package: Error: processing vignette ?BitSeq.Rnw' failed with diagnostics: Failed to locate the ?weave? output file (by engine ?utils::Sweave?) for

On 26/04/2017 4:36 PM, Herv? Pag?s wrote: > Hi, > > I'm running into a case where byte-compilation changes > the semantic of a function. This is with R 3.4.0: > > foo <- function(x) { TRUE && x } > > foo(c(a=FALSE)) > # [1] FALSE # OK > > foo(c(a=TRUE)) > # [1] TRUE # OK > > foo(c(a=FALSE)) > #

Thanks for the report. Fixed in R_devel with r72631; I'll port to R-patched later today or tomorrow. The default setting and how to get the current settings are documented in the Details section of the enableJIT help page at the end of the paragraph for enableJIT. Best, luke On Wed, 26 Apr 2017, Herv? Pag?s wrote: > Hi, > > I'm running into a case where byte-compilation

Dear R helper: When I was trying to install the fCalendar package, R report the following error and then my installation failed: * Installing *source* package 'fCalendar' ... ** R ** inst ** preparing package for lazy loading Loading required package: MASS Loading required package: fEcofin Loading required package: fUtilities Loading required package: RUnit RUnit 0.4.17 loaded.

> > Hi there, > Is that change in R-devel intentional? > > library(Matrix) > m <- as(matrix(c(0, 1)), "sparseMatrix") > > isS4(m) > # [1] TRUE > > x <- I(m) > # Warning message: > # In `class<-`(x, unique.default(c("AsIs", oldClass(x)))) : > # Setting class(x) to multiple strings ("AsIs",

Environment variables set with Sys.putenv() disappear (i.e. become "") after a while, especially after heavy-duty I/O. Example: R> x <- matrix(1., 3000, 3000) R> save(x, file="myx.RData") R> Sys.putenv(HOME="/tmp") R> while (Sys.getenv("HOME") != "") {cat("ok\n"); load("myx.RData")} The loop prints

Full_Name: Kevin Wright Version: 1.5.1 OS: Windows 95 Submission from: (NULL) (170.54.59.160) In the R windows FAQ, item 3.6 (Package TclTk does not work) currently has this line: Sys.putenv("TCL_LIBRARY"="c:/Program Files/Tcl/lib/tcl8.3") I find that if I execute the following two lines after starting R, I can then do library(tcltk) and demo(tkdensity) as usual. I do

Hello, How do you change the language of the labels in a graph. In this example, I want to get French labels by changing Sys.putenv. I should get "Mai" instead of "May". Sys.putenv(LANGUAGE="fr") x <- as.Date(c("1jan1960", "2jan1960", "31mar1960", "30jul1960"), "%d%b%Y") y <-1:4 plot(x,y) Regards, Pierre

Hi, I am making a game with Ruby/SDL and have run into trouble finding a GUI to cooperate. I have seen numerous examples of wxWindows in combination with SDL (wxPython and PyGame), but have yet to be able to do it in ruby (PyGame example: http://wiki.wxpython.org/index.cgi/IntegratingPyGame). I am not very good with wxRuby as this is my first time using it and thought some more knowledgable users

Hi all, I used to connect internet via a proxy. Before update packages I wrote in R Sys.putenv("http_proxy"="http://proxy3.redegov.sp.gov.br:80/") Nevertheless the way the connection is done has changed. For example, in the browser the proxy is not indicated and I have to give an username and a password to have access to internet. I read the FAQ and the help for