similar to: Missing values for S4 slots

Hello all. I'm developing a package for R holding a Gibbs sampler, which tends to have better performance when written in C than in R. During each iteration in the Gibbs sampler, I need the inverse of a symmetric matrix. For this, I wish to use lapack, as is concisely suggested in "Writing R extensions", since this will have better performance than I could ever write myself. After

I've had repeated problems with promptClass missing methods, usually telling me a class has no methods when it does. In my current case, I've defined an S4 class "mspathCoefficients" with a print method setMethod("print", signature(x="mspathCoefficients"), function(x, ...) { # etc The file promptClass creates has no methods in it. >

Dear developers, I am trying to run some C/ Fortran code in R. Although I have experience with that in Windows (Vista) 32 bit, I could not succeed in 64 bit. I downloaded the following: - R 2.12.0 - Rtools 212 - miktex 2.9 - inno setup 5 -Afterwards, I changed the path as: ?C:\Program Files\R\R-2.12.0\bin;C:\Rtools\bin;C:\Rtools\MinGW64\bin;C:\Program Files\HTML Help Workshop;C:\Program Files

ID: T8dfe471e360ac80264c6c Dear, I'm using R 2.8.1 with the package reshape version 0.8.2 . It seems that the combine_factor function has problems with combining levels to an empty level: #EXAMPLE WORKING test<-sample(c(1:10),1000,replace=T) testf<-factor(test, c(1:10), LETTERS[1:10]) table(testf,exclude=NULL) testc<-combine_factor(testf, c(1,1,1,1,1,2,2,2,2,2))

This is was something like a request for your comments, thoughts on the topic... Many of you will know that the "..." (aka \dots) argument is very useful for passing ``further graphical parameters'', but can be a pain when itself is passed to too many plotting functions inside your own function. An artificial example being myplot <- function(x,y, ...) { plot(0:1, 0:1,

Dear R-users, I am translating a S script into R and having some troubles with the match function. This function appears to work with vector and data.frame in S, but not in R, e.g.: a <- rep((1:4), each = 10) b <- rep((1:10), times = 4) mydf <- data.frame(a,b) myarg <- mydf[1,] match(myarg, mydf) # S returns 1 but R returns NA NA I guess one could use match(interaction(myarg),

Hi all, I'm trying to process all files with a certain extension "*.ext" in a directory like this: > R --slave --args /my/dir < dir_plot.r where I then I want to do something like: myarg <- commandArgs() inputdir <- myarg[length(myarg)] print(inputdir) "for file with extension "*.ext in inputdir" do data = process.data(file) outfile =

I have several hundred Excel 2007 data files in a folder. I would like to read every file in a single given folder using a loop. I have searched the FAQ, the forum archives here, other or older R boards and the R Import / Export documentation, and have asked some very knowledgeable R users without learning of a solution. I hope someone here can help. I understand that the most common

Dear List, just out of pure curiosity: is it possible to define a function via 'substitute()' such that the function's formal arguments are specified by a "wildcard" that is substituted when the expression is evaluated? Simple example: x.args <- formals("data.frame") x.body <- expression( out <- myArg + 100, return(out) ) expr <-

Dear R gurus, I have a function "goftests" that receives the following arguments: * a vector "x" of data values; * a distribution name "dist"; * the dots list ("...") containing a list a parameters to pass to CDF function; and calls several goodness-of-fit tests on the given data values against the given distribution. That is: ##### BEGIN CODE SNIP #####

Hi, I need to run a PCoA (PCO) for a data set wich has both positive and negative values for variables. I  could not find any distancecoefficient other than euclidean distace running for the data set. Are there any other coefficient works with negtive values.Also I cannot get summary out put (the eigen values) for PCO as for PCA.   Thanks. Dilshan [[alternative HTML version deleted]]

Frequently we have a print method, say print.myclass, that has a variety of arguments. If in the .Rd file I say \usage{ \method{print}{myclass}(x, myarg) } I get a warning when running R CMD chk: * checking generic/method consistency ... WARNING print: function(x, ...) print.myclass: function(x, myarg) What is the proper way to handle this? Thanks -- Frank E Harrell Jr

Full_Name: Bill Dunlap Version: 2.5.0 OS: Red Hat Enterprise Linux WS release 3 (Taroon Update 6) Submission from: (NULL) (24.17.60.30) If you read a dcf file with read.dcf(file,fields=c("Field",...)) and the file does not contain the desired field "Field", read.dcf puts a character NA for that entry in its output matrix. If you then call write.dcf, passing it the output of

Dear all Recently, i did some work to test small files performance for gnfsv3 transport. Following is my scenario. #####environment##### ==2 cluster nodes(nodeA/nodeB)== each is equipped with E5-2650*2, 128G memory and 10GB*2 netcard nodeA: 10.254.3.77 10.128.3.77 nodeB: 10.254.3.78 10.128.3.78 ==2 stress nodes(clientA/clientB)== each is equipped with E5-2650*2, 128G memory and 10GB*2

Below is an example of output that changed as a result of r64970. I did not see any NEWS item suggesting this change is expected. Note that the example is contrived and I don't have a use case for it. I stumbled across it when playing with recent changes in R relating to duplication. Does the example use undefined syntax? ----- fn1 <- function(mylist) { fn1a <- function()

I'm currently running Samba 2.2.8a as a NT-style domain server. I have a few different questions regarding this setup. First, how can I add samba users to groups so that I can specify 'DOMAIN\Group' in the permissions for a particular share on an XP machine attached to the domain? Also, how can I set account types other than admin and not-admin for use when logging in under

BIll, Thanks. I am seeing some problems here, for example when all the fields are missing, or all the fields in a row are missing. I've fixes for those, and will commit to R-devel shortly. On Tue, 17 Jul 2007, bill at insightful.com wrote: > Full_Name: Bill Dunlap > Version: 2.5.0 > OS: Red Hat Enterprise Linux WS release 3 (Taroon Update 6) > Submission from: (NULL)

Context: I'm relatively new to R and am working with very large datasets. General problem: If working on a dataset requires that I produce more than two objects of roughly the size of the dataset, R quickly uses up its available memory and slows to a virtual halt. My tentative solution: To save and remove objects as they're created, and load them when I need them. To do this I'm

Dear List, I have been trying to extract associations from a matrix whereby individual locations are within a certain distance threshold from one another. I have been able to extract those individuals where there is 'no interaction' (i.e. where these individuals are not within a specified distance threshold from another individual) and give these individuals a unique Group ID containing

Hi, When a domain shuts down it seems to stay visible in the output of xm list (see below) even if I do an ''xm destroy''. Has something changed (they used to disappear just fine for me)? I am running Xen 2.0 (fairly up-to-date). Name Id Mem(MB) CPU State Time(s) Console Domain-0 0 395 0 r---- 2377.2 cagnode91-clone 10 199 2