similar to: Last R-devel snapshot is an empty tarball

Hi, Today I downloaded and compiled the last R-devel snapshot. The SVN-REVISION in the tarball contains the following: Revision: 36792 Last Changed Date: 2005-12-18 But after compiling on Unix (I compiled out of tree), I ended up with an SVN-REVSION file containing: Revision: unknown Last Changed Date: Today in the build tree. Then when I start R, I get: R : Copyright Today, The

Fine with me as long as eliminating the inconveniences associated with it can be put on the roadmap. The alias instability and the fact that the user has no way to know if s/he should do ?`foo,numeric-method` or ?`foo,numeric,ANY-method` to find the method has been a long-standing problem. H. On 3/21/19 21:29, Michael Lawrence wrote: If we started over, I'd try to avoid this sort of

Hi, It's unfortunate that with recent revisions of R 2.13 (this appeared in revision 54640, March 2), 'R CMD build' now removes empty dirs in the package. People might have good reasons for having empty dirs in their packages. For example, in Bioconductor, we have some tools to automatically generate annotation packages and those tools are implemented in software packages that use

Hi, I get a compilation error with last available R devel snapshot (R-devel_2007-08-12.tar.gz, r42483): ==================== CONFIGURE ==================== hpages at wilson1:~/R-2.6.broken> ~/src/R-2.6.r42483/configure checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu [...] R is now configured for x86_64-unknown-linux-gnu Source

Hi Michael, Thanks for looking into this. I suspect that truncation of ANY suffixes from method signatures is also the culprit behind the sudden breakage of aliases of the form \alias{foo,numeric-method} when a method without the ANY suffix in its signature gets added to the ecosystem. See my post about this to the Bioc-devel mailing list a couple of months ago:

Hi, I get this error with R-2.5.0 alpha and R-2.6.0 devel: > source("http://bioconductor.org/biocLite.R", echo=TRUE) Error in if (timestamp != srcfile$timestamp) warning("Timestamp of '", : missing value where TRUE/FALSE needed Same with 'verbose=TRUE': > source("http://bioconductor.org/biocLite.R", verbose=TRUE)

Hi, we noticed that since some time after Aug 24th the daily snapshots provided on ftp://ftp.stat.math.ethz.ch/Software/R/ no longer have their default tarball file name but dropped the date stamp, i.e. R-devel_.tar.bz2 Same for R-patched snapshots. Could one of the maintainers please take a look. We rely on the default naming convention for automatic builds. Regards, Matthias --

Hi, On Windows, with last R-devel tarball (r40647) from ftp://ftp.stat.math.ethz.ch/Software/R/R-devel_2007-02-04.tar.gz I get the following build error: E:\biocbld\bbs-2.0-bioc\R\src\gnuwin32> make ... ... ---------- Making package utils ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files Error in namespaceExport(ns, exports) :

Hi Mehmet, On 11/29/2017 11:22 AM, Suzen, Mehmet wrote: > Hi Herve, > > I think you are confusing subclasses and classes. There is no > contradiction. `is` documentation > is very clear: > > `With one argument, returns all the super-classes of this object's class.` Yes that's indeed very clear. So if "list" is a super-class of "data.frame" (as

Hi, > dd <- data.frame(A=c("b","c","a"), B=3:1) > dd A B 1 b 3 2 c 2 3 a 1 > unlist(dd) A1 A2 A3 B1 B2 B3 2 3 1 3 2 1 Someone else might get something different. It all depends on the values of its 'stringsAsFactors' option: > dd2 <- data.frame(A=c("b","c","a"), B=3:1, stringsAsFactors=FALSE) > dd2

I agree with Herve, processing collapse happens last so collapse=non-NULL always leads to a single character string being returned, the same as paste(collapse=""). See the altPaste function I posted yesterday. Bill Dunlap TIBCO Software wdunlap tibco.com On Fri, May 22, 2020 at 9:12 AM Herv? Pag?s <hpages at fredhutch.org> wrote: > I think that > >

Hi Herve, Inline. On Thu, May 16, 2019 at 4:45 PM Pages, Herve <hpages at fredhutch.org> wrote: > Hi Gabe, > > ncol(data.frame(aa=c("a", "b", "c"), AA=c("A", "B", "C"))) > # [1] 2 > > ncol(data.frame(aa="a", AA="A")) > # [1] 2 > > ncol(data.frame(aa=character(0),

Here is an example: setGeneric("foo", function(x, y) standardGeneric("foo")) setMethod("foo", c("numeric", "ANY"), function(x, y) cat("I'm the foo#numeric#ANY method\n") ) Dispatch works as expected but selectMethod() fails to find the method: > foo(1, TRUE) I'm the foo#numeric#ANY method >

Hi Martin et al, On Thu, May 21, 2020 at 9:42 AM Martin Maechler <maechler at stat.math.ethz.ch> wrote: > >>>>> Herv? Pag?s > >>>>> on Fri, 15 May 2020 13:44:28 -0700 writes: > > > There is still the situation where **both** 'sep' and 'collapse' are > > specified: > > >> paste(integer(0),

Hi, Currently object.size() is not very useful on environments as it always returns 56 bytes, no matter how big the environment is: env1 <- new.env() object.size(env1) # 56 bytes env2 <- new.env(hash=TRUE, size=75000000L) object.size(env2) # 56 bytes env3 <- list2env(list(a=runif(25000000), L=LETTERS)) object.size(env3) # 56 bytes This makes it pretty useless on

Hi, The unary forms of is() and extends() report that data.frame extends list, oldClass, and vector: > is(data.frame()) [1] "data.frame" "list" "oldClass" "vector" > extends("data.frame") [1] "data.frame" "list" "oldClass" "vector" However, the binary form of is()

Gabe, It's the current behavior of paste() that is a major source of bugs: ## Add "rs" prefix to SNP ids and collapse them in a ## comma-separated string. collapse_snp_ids <- function(snp_ids) paste("rs", snp_ids, sep="", collapse=",") snp_groups <- list( group1=c(55, 22, 200), group2=integer(0), group3=c(99,

Hi, With recent versions of R-devel, "R CMD check" complains about some "Rd files with unknown sections". hpages at gladstone:~> R CMD check multtest_1.9.4.tar.gz ... ... * checking Rd files ... WARNING Rd files with unknown sections: /home/hpages/multtest.Rcheck/00_pkg_src/multtest/man/boot.resample.Rd: notes

Hi Gabe, On 09/29/2015 02:51 PM, Gabriel Becker wrote: > Herve, > > The problem then would be that for A a refClass whose fields take up N > bytes (in the sense that you mean), if we do > > B <- A > > A and B would look like the BOTH take up N bytes, for a total of 2N, > whereas AFAIK R would only be using ~ N + 2*56 bytes, right? Yes, but that's still a *much*

Happy new year everybody, I'm getting the following while trying to use the agrep() function: > pattern <- "XXX" > subject <- c("oooooo", "oooXooo", "oooXXooo", "oooXXXooo") > max <- list(ins=0, del=0, sub=0) # I want exact matches only > agrep(pattern, subject, max=max) [1] 4 OK > max$sub <- 1 # One allowed