similar to: R-2.3.1 MacOSX segfault (PR#9014)

Dear all, this is my first message to this list. I hope it is not off topic (and should have been posted to R-help for example). I have R-2.3.0 installed on a couple of systems, including powermac G5, iBook G4 (both with MacOSX 10.4.6), windows xp and linux (kubuntu 5.10). When trying to install package aroma from authors web site I found that R for macosx crashes with segfault. This

Hello, I was trying to use get.hist.quote in tseries, and got a segfault: -8<----------------------------------- > library(tseries) Loading required package: quadprog Loading required package: zoo 'tseries' version: 0.10-6 'tseries' is a package for time series analysis and computational finance. See 'library(help="tseries")' for

Dear developers, has anyone experienced the problem described below? Is it a bug in handling interrupts in R? Best, Oleg -------- Original Message -------- Subject: Re: [BioC] 'recursive default argument' error in GOENTREZID2GO From: Diego Diez <diez at kuicr.kyoto-u.ac.jp> ...steps that use to reach me to that point. It happens with any environment, or at least annotation

Dear R users, I am trying to get data from the clipboard into R on MacOSX. I tried the following, but got an error message: read.delim("clipboard") Error in file(file, "r") : unable to open connection In addition: Warning message: unable to contact X11 display Obviously, I'm not running R using X11. I'm wondering, can I import data from the clipboard on MacosX?

Dear all, I'm working on MAC OS X 10.4.7 using R version 2.3.1 (June 2006) and platform powerpc-apple-darwin8.6.0. Since I installed the new version of R I cannot install packages any more (but it worked fine before) and get the following message every time. I can, however, install packages from the command line if I get them as precompiled binaries.

Hi folks, Warning: I don't know if the result I am getting makes sense, so this may be a statistics question. The fitted values from my binomial lmer mixed model seem to consistently overestimate the cell means, and I don't know why. I assume I am doing something stupid. Below I include code, and a binary image of the data is available at this link:

> install.packages("rggobi", repos="http://ggobi.org/r/") Warning in install.packages("rggobi", repos = "http://ggobi.org/r/") : argument 'lib' is missing: using /Users/hadley/Library/R/library/ Reading symbols for shared libraries . done Program received signal EXC_BAD_ACCESS, Could not access memory. Reason: KERN_INVALID_ADDRESS at

Hi. I've just compiled and installed 1.0beta7 on MacOSX 10.4.6. I have lost the battle with PAM authentication. When I connect to the IMAP server and provide the correct user name and password, the mail client is told authentication failed. Here's what's in the log: Apr 21 22:47:43 shaun dovecot: auth(default): client in: AUTH 2 PLAIN service=IMAP secured

Hi, On OS X (10.4.6), Rails 1.1.2... I tried doing a sudo gem update, and this is the result I''m getting: Upgrading installed gems... Attempting remote upgrade of mysql Attempting remote installation of ''mysql'' Select which gem to install for your platform (powerpc-darwin8.6.0) 1. mysql 2.7.2006.04.21 (mswin32) 2. mysql 2.7 (ruby) 3. mysql 2.6 (ruby) 4. mysql

The warnings from make.packages.html() on the Apple Mac OS X platform can be dealt with as follows: ------------------------------------------------ (1) make.packages.html() uses the function tempdir() and attempts to create a temporary directory in the default location /tmp/ which fails due to the /tmp directory architecture on the Mac. I set up a .Renviron file in my user account

Hi, I''ve installed sqlite3 (via the instructions at http://wiki.rubyonrails.org/rails/pages/HowtoUseSQLite), and all went well OSX 10.4.7 ruby 1.8.4 (2005-12-24) [powerpc-darwin8.6.0] and sqlite3.rb is in /usr/local/lib/ruby/gems/1.8/gems/sqlite3-ruby-1.1.0/lib but I can''t <require ''sqlite3''> caw$ irb irb(main):001:0> require

Hola: Si codificas "col1" como un factor, lo puedes cambiar todo de una vez renombrando los niveles correspondientes: > df$col1<-as.factor(df$col1) > df$col1  [1] uno   dos   3     4     cinco 6     siete 8     9     diez Levels: 3 4 6 8 9 cinco diez dos siete uno > levels(df$col1)[1:5] <-

When I `sudo gem install mysql` I get the following: --snip-- $ sudo gem install mysql Attempting local installation of ''mysql'' Local gem file not found: mysql*.gem Attempting remote installation of ''mysql'' Updating Gem source index for: http://gems.rubyforge.org /usr/local/lib/ruby/1.8/yaml.rb:133: [BUG] Segmentation fault ruby 1.8.4 (2005-12-24)

Hi Folks, I think I have searched exhaustively, including, of course R-help (D. Bates, S. Graves, and others) and but I remain uncertain about testing fixed effects with lmer(..., family=binomial). I gather that mcmcsamp does not work with Do we rely exclusively on z values of model parameters, or could we use anova() with likelihood ratios, AIC and BIC, with (or without)

Because of Plain text mode, my output example is split across several lines and hence is totally meaningless. If you want to see the example, follow this link : http://download.caoba.fr/r3tb7hxb2pl5/ I marked in red the places where the bug appears. ------------------------- Santiago DIEZ Quark Systems & CAOBA 23 rue du Buisson Saint-Louis, 75010 Paris ------------------------- On Thu, Feb

Hi folks, I am tearing my hair out on this one. I am using an example from Pinheiro and Bates. ### this works data(Orange) mod.lis <- nlsList(circumference ~ SSlogis(age, Asymp, xmid, scal), data=Orange ) ### This works mod <- nlme(circumference ~ SSlogis(age, Asymp, xmid, scal), data=Orange, fixed = Asymp + xmid + scal ~ 1, start =

With a recent R 2.4 I notice the following: df <- data.frame(x=1:2) > row.names(df) [1] "1" "2" > rownames(df) [1] 1 2 This seems related to recent changes in the internal storage format of the row names data for data frames. The man page for rownames says: For a data frame, 'rownames' and 'colnames' are equivalent to 'row.names'

Hi, I have a first quick patch and a question. The patch links f951 with g++ when LLVM is enabled. It's at the end of this email. I wanted to know if I should submit patches with comments around them like the "APPLE LOCAL LLVM" ones that mark the LLVM-only changes to the tree. I'd like to make it as easy as possible to apply these, so let me know any rules I should be following.

(1) read.table(), with sep="\t", identifies 13 our of 1400 records, in a file with 1400 records of 3 fields each, as having only 2 fields. This happens under version 2.3.1 for Windows as well as with R 2.3.1 for Mac OS X, and with R-devel under Mac OS X. [R version 2.4.0 Under development (unstable) (2006-07-03 r38478)] (2) Using read.table() with sep="\t", the first 1569

Running R.app on Mac OS X 10.4 > version _ platform powerpc-apple-darwin8.6.0 arch powerpc os darwin8.6.0 system powerpc, darwin8.6.0 status major 2 minor 3.1 year 2006