similar to: Building R package: make pdf & _masked_by_GlobalEnv

Hello. I am creating an R package that I'd like to submit to CRAN (OS Windows XP). How do I distinguish among 'public' functions, e.g., those that are intended to be called by users of the package and for which I am providing documentation & examples, and 'private' functions, which are used internally by the 'public' functions, but for which I do not wish to

Hello... I would like to use R for 'pipelining' data among several programs. I'm wondering how I can use R to call another program, feed that program a set of parameters, and retrieve the output. E.g., I have an executable that, when opened, prompts the user to enter a set of parameters. The program then executes & prompts the user for the name of an output file. I need to

Hello... Is it possible to use "density" or another kernel density estimator to identify the mode of a distribution? When I use 'density', the resulting density plot of my data is much cleaner than the original noisy histogram, and I can clearly see the signal that I am interested in. E.g., suppose my data is actually drawn from two or more normal (or other)

This might be of interest: http://math.usu.edu/~minnotte/research/software/modetree.r (I was not able to get to the link, but google has a cached version.) Prof. Marron's SiZer maps may also be of interest, but AFAIK the code is in Matlab only. Andy From: Dan Rabosky > > > Hello... > > Is it possible to use "density" or another kernel density > estimator to

Hi I have a question about the creation of variables within lists in R. I am running simulations and am interested in two parameters, ESM and ESMM (the similarity of these names is important for my question). I do simulations to generate ESMM, then plug these values into a second simulation function to get ESM: x <- list() for (i in 1:nsimulations) { x$ESMM[i] <- do_simulation1()

Hello - I am having a problem with the function 'integrate'. I am running R on OSX (R 2.5.1). I am trying to suppress the error message when 'integrate' attempts to integrate across a parameter set giving a non-finite function value. I'm using it in a MCMC / simulated annealing algorithm, and it is entirely possible that some parameter sets will give non-

On 29 May 2018 at 16:37, R P Herrold wrote: | On Tue, 29 May 2018, Dirk Eddelbuettel wrote: | | > On a CentOS 7 machine, I am at a loss with respect to an inability to run a | > full R CMD check as anything involving tex files ends in tears. | | Hi, Dirk | | Have fun at the upcoming conference at UIC | | I seem to have 56 font packages installed under CentOS 7 | locally, but then I work

I'd like to make MikTeX the default TeX package in 2.2.0, but we still need to let people use other packages. The problem is that MikTeX wants a command line option --include-directory $R_HOME/share/texmf, while other packages specify includes via environment variables, and barf when they see the unexpected option. The choice should be controlled by the user's settings in the MkRules

I'm having a problem rebuilding a package, new to me in R 2.15.0 (Linux) It hits all that contain the line \usepackage[pdftex]{graphics} and leads to the following when running R CMD check on the directory. (I do this often; a final run on the tar.gz file will happen before submission.) Since I float and resize my figures, removing the line is fatal in other ways.

Hello, I can't seem to save (or find the default location) when I use the Window Graphic Device's pull down menu. It does not seem to save to the directory I have set using "setwd(...)". How do I make the pull down menu's work? What is the best format to save R graphics for inclusion into a LaTeX documents? I will use PdfTex, or LaTeX -> PS -> PsToPdf to generate the

Dear R developers, I had some problem when building package: for exemple when building the package e1071 available from CRAN, I get the following message error: * checking for file 'e1071/DESCRIPTION' ... OK * preparing 'e1071': * cleaning src * running cleanup * creating vignettes ... ERROR /usr/lib/R/bin/texi2dvi: pdflatex exited with bad status, quitting.

I'm trying to (re)learn Sweave and run into some problems. I use now ubuntu (8.10), emacs + ess. Slowly getting upto speed on ess. I have a complete (hopefully) .Rnw file, but the resulting .tex will not compile. The file does not contain anything exotic, but it produces pdf figures, and that is where the problems come: library(tools) > Sweave("varioCoo.Rnw") Writing to file

Hi, Due to a change in Rd.sty a few days ago (https://github.com/wch/r-source/commit/620eb9a#diff-3bf3d821c6faae50cd6ec931f6f63296L272), the default installation of TeXLive 2009 or 2012 no longer works when building Rd to PDF. The error log is like this: =============== Converting Rd files to LaTeX ..... Creating pdf output from LaTeX ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean,

Hi, I run into a problem with "R CMD Rd2dvi" command: it gives me "File `Rd.sty' not found" error (See the output message on the bottom). I get the same error when running "RCMD check". My system is: Windows 2000, R version 2.0.1, MiKTeX version 2.4. I do have a Rd.sty file in R_HOME/share/texm directory. I looked through newsgroups for any related discussions

I am having trouble converting the output from Sweave into a valid PDF file. I have created a simple .Rnw file which will become a full vignette at some point, but during the intermediate testing, I got errors from texi2dvi. This is what I have done. 0) Using a Windows Xp system 1) Created a file called GeneSpring.Rnw 2) Convert this to Tex using Sweave("GeneSpring.Rnw") from within R

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

Dear list, I am trying to produce a pdf manual using Rtools (version 3.1.0.1936) on Windows 8 (64-bit). I am also aware of the inconsolata issue posted in the forum (https://stat.ethz.ch/pipermail/r-devel/2013-June/066850.html), and then I have installed the patched version of R-3.0.1. However I still have some errors with the following message: R CMD Rd2pdf mypack Hmm ... looks like a package

Hello, I should use R on cygwin. I have ever install cygwin and now I try to install R. I have read the R manual and particularly the part : Installation R under Unix but I improved some difficulties for succeed in this task. Actually I have create a R repertory where I have unzipped the file R-2.9.1.tar.gz. In this repertory I do ./configure in cygwin but some errors appear and I don't

I am trying to compose some documentation for a package I hope to release soon. However when I do the following: R CMD Rd2dvi --pdf mypackage.Rd I get two mainly blank pages prepended to the top of the document - the only text on either (at the top of the first page) is as follows: hyperindex,colorlinks,pagebackref,linktocpage,plainpages=false,linkcolor=Blue

A kind member of R-core suggested this is due to a misconfiguration on my system, and to post it to the mailing list for troubleshooting. When trying to build R version 4.3.3, in at least two places during the process it gives LaTeX errors of the form: (example 1) you should 'make docs' now ... make[1]: Entering directory '/home/btyner/R-4.3.3/doc' creating