similar to: install.packages("C", dep=TRUE) does not always install indirect dependencies

In the man page for as.vector() (same as man page for vector()): Writers of methods for ?as.vector? need to take care to follow the conventions of the default method. In particular ? Argument ?mode? can be ?"any"?, any of the atomic modes, ?"list"?, ?"expression"?, ?"symbol"?, ?"pairlist"? or one of the

Happy new year everybody, I'm getting the following while trying to use the agrep() function: > pattern <- "XXX" > subject <- c("oooooo", "oooXooo", "oooXXooo", "oooXXXooo") > max <- list(ins=0, del=0, sub=0) # I want exact matches only > agrep(pattern, subject, max=max) [1] 4 OK > max$sub <- 1 # One allowed

"Equivalence" certainly does not mean that literally replacing some text will not change the result. >From "R language definition", p. 11: > Except for the syntax, there is no difference between applying an operator and calling a function. In fact, x + y can equivalently be written ?+?(x, y). Notice that since ?+? is a nonstandard function name, it needs to be quoted.

Hi, Today I downloaded and compiled the last R-devel snapshot. The SVN-REVISION in the tarball contains the following: Revision: 36792 Last Changed Date: 2005-12-18 But after compiling on Unix (I compiled out of tree), I ended up with an SVN-REVSION file containing: Revision: unknown Last Changed Date: Today in the build tree. Then when I start R, I get: R : Copyright Today, The

Hello, Man page for 'install.packages' says that if the 'lib' arg is missing, then it "defaults to '.libPaths()[1]' with a warning". But, given the 'install.packages' source code, it seems that this warning is issued only when 'length(.libPaths()) > 1'. So typically, this warning will appear on Mac OS X but not on a Linux or Windows systems

Hey all, My VPS system is now booting up perfectly apart from the following errors: "Checking for new hardwaremodprobe: FATAL: Could not load /lib/modules/2.6.12-1.1387_FC4xen0/modules.dep: No such file or directory modprobe: FATAL: Could not load /lib/modules/2.6.12-1.1387_FC4xen0/modules.dep: No such file or directory modprobe: FATAL: Could not load

Hi, With recent versions of R-devel, "R CMD check" complains about some "Rd files with unknown sections". hpages at gladstone:~> R CMD check multtest_1.9.4.tar.gz ... ... * checking Rd files ... WARNING Rd files with unknown sections: /home/hpages/multtest.Rcheck/00_pkg_src/multtest/man/boot.resample.Rd: notes

Not sure why the performance penalty of nonstandard evaluation would be more of a concern here than for something like switch(). If that can't/won't be fixed, what about fixing the man page so it's in sync with the current behavior? Thanks, H. On 05/03/2017 02:26 AM, peter dalgaard wrote: > The first line of stopifnot is > > n <- length(ll <- list(...)) > >

Hello, I am a new on this list, so I introduce myself very briefly: my background is applied mathematics, more precisely scientific calculus applied for modeling metabolic systems, I am author/maintainer of few packages (Deriv, rmumps, arrApply). Now, on the subject of this discussion, I must say that I don't really understand Peter's argument: >>> To do it differently,

Hi, Installing from binaries on Windows: > install.packages("multtest") Warning: dependency 'Biobase' is not available trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.12/multtest_2.6.0.zip' Content type 'application/zip' length 1645590 bytes (1.6 Mb) opened URL downloaded 1.6 Mb package 'multtest' successfully unpacked

>>>>> Herv? Pag?s <hpages at fredhutch.org> >>>>> on Wed, 3 May 2017 12:08:26 -0700 writes: > On 05/03/2017 12:04 PM, Herv? Pag?s wrote: >> Not sure why the performance penalty of nonstandard evaluation would >> be more of a concern here than for something like switch(). > which is actually a primitive. So it seems that

Hi, The following commands: > tar zxvf R-devel_2005-12-14.tar.gz > mv R-devel R-2.3 > cd R-2.3 > ./configure --with-blas='-framework vecLib' --with-lapack > make give me the following error on my Mac OS X system: ... g77 -fno-common -g -O2 -c xxxpr.f -o xxxpr.o make[3]: *** No rule to make target `-lintl', needed by `libR.dylib'. Stop. make[2]: *** [R]

>>>>> Serguei Sokol <sokol at insa-toulouse.fr> >>>>> on Mon, 15 May 2017 13:14:34 +0200 writes: > I see in the archives that the attachment cannot pass. > So, here is the code: [....... MM: I needed to reformat etc to match closely to the current source code which is in

Fine with me as long as eliminating the inconveniences associated with it can be put on the roadmap. The alias instability and the fact that the user has no way to know if s/he should do ?`foo,numeric-method` or ?`foo,numeric,ANY-method` to find the method has been a long-standing problem. H. On 3/21/19 21:29, Michael Lawrence wrote: If we started over, I'd try to avoid this sort of

Iam new to Xen and I am trying to FC4 and FC4 domains. I came across a problem when my newly created domain never gets a network. When I start the domain I get a fatal error that leads me to believe that thios might be the reason why I don''t have networking with the bridge: Checking for new hardwaremodprobe: FATAL: Could not load /lib/modules/2.6.12-1.1411_FC4xen0/modules.dep: No such

Is it possible to eliminate the postfix dep that is required to update to the latest redhat-lsb rpm when upgrading to 3.4 can i just download the source and remove the postfix dep and rebuild, and update the redhat-lsb rpm on my system. i dont think that the post fix dep was there when i updated to 3.3 from 3.1

On 05/03/2017 12:04 PM, Herv? Pag?s wrote: > Not sure why the performance penalty of nonstandard evaluation would > be more of a concern here than for something like switch(). which is actually a primitive. So it seems that there is at least another way to go than 'dots <- match.call(expand.dots=FALSE)$...' Thanks, H. > > If that can't/won't be fixed, what about

Hi, In the man page for vector(): length: A non-negative integer specifying the desired length. Double values will be coerced to integer: supplying an argument of length other than one is an error. Since long vectors are supported, it doesn't seem to be true anymore that "double values will be coerced to integer": > bigraw <-

Hi Michael, Thanks for looking into this. I suspect that truncation of ANY suffixes from method signatures is also the culprit behind the sudden breakage of aliases of the form \alias{foo,numeric-method} when a method without the ANY suffix in its signature gets added to the ecosystem. See my post about this to the Bioc-devel mailing list a couple of months ago:

On 4/25/19 04:57, Tomas Kalibera wrote: > On 4/25/19 3:11 AM, Pages, Herve wrote: >> Hi, >> >> I was playing around with inotifywait (great tool!) to see the new >> staged installation of source packages in action. In one terminal I'm >> monitoring the create/delete/move events of the installation library >> with: >> >> ? ? inotifywait -m