similar to: c++ code on amd64

All, I really need some help. I'm putting samba up on a new windows domain called SIERRA. I'm using Samba 3.0.2a on Solaris 8. I'm barely knowledgeable on Windows NetBIOS... but am good with Solaris. The status is that I've got the daemons running and working normally. I have 1 desktop with 1 PDC & 1 BDC in the SIERRA domain. On the desktop, I can see both DC's but

Hi, I have built R (current development version) and BioConductor 1.7 with portland group compiler on a AMD Opteron. When I ran qc assessment on Affymetrix latin square data set, I got the following output, Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view,

Hi there, I got a problem when trying to read in a .cel file using ReadAffy(). R codes: require(affy) ReadAffy(filenames="CH1.CEL") It failed and I got the error, Error in read.celfile.header(as.character(filenames[[1]])) : Is CH1.CEL really a CEL file? tried reading as text, gzipped text, binary, gzipped binary, command console and gzipped command console formats Also, I tried

Hi all, I have a total newbie question, but I could really use some help. I need to read in this file: SampleID Disease E-CBIL-28-raw-cel-1435145228.cel 1 E-CBIL-28-raw-cel-1435145451.cel 2 E-CBIL-28-raw-cel-1435145479.cel 2 E-CBIL-28-raw-cel-1435145132.cel 3 E-CBIL-28-raw-cel-1435145417.cel 3 E-CBIL-28-raw-cel-1435145301.cel 2 E-CBIL-28-raw-cel-1435145558.cel 1

I have CEL files from Affymetrix Mouse Array 430_2 and am trying to get the the individual PM intensities (11 per gene) for each sample. I would like to write out this into a tab delimited text file. Where am I stalling? This is what I've done: Change dir(to where CEL files are saved) Data <- ReadAffy() eset <- rma(Data) write.exprs(eset, file="mydata.txt") With this I am

Hi, On Asterisk 16.11.1 when enabling cel I get error with BRIDGE_START and BRIDGE_END events zone-s*CLI> module reload cel The module 'cel' reported a reload failure     -- Reloading module 'cel' (CEL Engine) [2020-07-10 17:57:01] ERROR[16163]: cel.c:428 ast_cel_str_to_event_type: Unknown event name 'BRIDGE_START' [2020-07-10 17:57:01] ERROR[16163]:

Hi, R 2.5.0 isn't auto-completing paths properly as it used to. E.g. suppose I have: > dir("CEL/choe") [1] "chipC-rep1.CEL" "chipC-rep2.CEL" "chipC-rep3.CEL" "chipS-rep1.CEL" [5] "chipS-rep2.CEL" "chipS-rep3.CEL" Now if I do: ReadAffy("CEL/choe/ch<tab> # => ReadAffy("CEL/choe/chip

Dear list, I have been searching for a week to fit a simple linear model to my data. I have looked into the previous posts but I haven't found anything relevant to my problem. I guess it is something simple...I just cannot see it. I have the following data frame, named "data", which is a subset of a microarray experiment. The columns are the samples and the rows are the probes. I

On Wed, Jul 22, 2020 at 12:44 PM Administrator <admin at tootai.net> wrote: > No one on this ? > > Le 10/07/2020 à 18:06, Administrator a écrit : > > Hi, > > > > On Asterisk 16.11.1 when enabling cel I get error with BRIDGE_START > > and BRIDGE_END events > > > > zone-s*CLI> module reload cel > > The module 'cel' reported a

Dear Help, After loading the pd.Citrus library and checking the DataFrame, I ran > the R code for: > > 1) 'oligo' > > > > {> library(pd.citrus) > Loading required package: RSQLite > Loading required package: DBI > > data(pmSequence) > > > show(pmSequence) > DataFrame with 341730 rows and 2 columns > fid sequence > <integer>

Hi, Is there any function to replace colProds that finds column-wise products of a matrix? Or is there any other function that would give a better solution this problem ? I have a matrix and an array, example: > a GSM1.CEL GSM2.CEL GSM1.CEL 10000_at 1 3 1 10001_at 3 3 3 > b 10000_at

I am experiencing data loss on a CIFS share with Samba 3.6.3. I am running Debian Sid on x86. I mount the share with the following line in my fstab: //server/share /mnt/share cifs auto,users,rw,gid=50,dir_mode=0775,file_mode=0777,domain=DOMAIN,credentials=/root/share.credentials The user in the credential file is in the proper domain. GID 50 is "staff", which my user is a member

I'm having trouble setting up the function call to handle two lists of matrices. Each list has 6 matrices - Each matrix is 20x10. I need to do some basic math on corresponding matrices in each list. Here are some outputs of these lists, etc... # first list > length(qc.pm) [1] 6 > dim(qc.pm[[1]]) [1] 20 10 > qc.pm[[1]][1:4,1:4] 441-JP071707.CEL 442-JP071707.CEL

Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many

Hi all , I have one query. i have list of some .cel files. in my program i have to mention the path of these .cel files part of my program is, rna.data<-exprs(justRMA(filenames=file.names, celfile.path=*datadir*, sampleNames=sample.names, phenoData=pheno.data, cdfname=cleancdfname(hg18_Affymetrix U133A))) in the place of "datadir" i have to mention the character string of the

On Wed, 21 Oct 2020 16:15:22 -0500 Ana Marija <sokovic.anamarija at gmail.com> wrote: > Hello, > > I have a data frame with one column: > > > remove > > V1 > > 1 ABAFT_g_4RWG569_BI_SNP_A10_35096 > 2 ABAFT_g_4RWG569_BI_SNP_B12_35130 > 3 ABAFT_g_4RWG569_BI_SNP_E09_35088 > 4 ABAFT_g_4RWG569_BI_SNP_E12_35136 > 5

Hello, I have a data frame with one column: > remove V1 1 ABAFT_g_4RWG569_BI_SNP_A10_35096 2 ABAFT_g_4RWG569_BI_SNP_B12_35130 3 ABAFT_g_4RWG569_BI_SNP_E09_35088 4 ABAFT_g_4RWG569_BI_SNP_E12_35136 5 ABAFT_g_4RWG569_BI_SNP_F11_35122 6 ABAFT_g_4RWG569_BI_SNP_F12_35138 7 ABAFT_g_4RWG569_BI_SNP_G07_35060 8 ABAFT_g_4RWG569_BI_SNP_G12_35140 I want to remove these 8

Hi, I have two data set of normalized Affymetrix CEL files, wild type vs Control type.(each set have further three replicates). > wild.fish AffyBatch object size of arrays=712x712 features (10 kb) cdf=Zebrafish (15617 affyids) number of samples=3 number of genes=15617 annotation=zebrafish notes= > Dicer.fish AffyBatch object size of arrays=712x712 features (10 kb) cdf=Zebrafish (15617

test<-c("20120111_181515_001_CCL54D_A01_S02_APL932_PL11_DL_20120111.CEL", "20120111_181516_002_CCL54D_A02_S08_APL932_PL11_DL_20120111.CEL") > test [1] "20120111_181515_001_CCL54D_A01_S02_APL932_PL11_DL_20120111.CEL" [2] "20120111_181516_002_CCL54D_A02_S08_APL932_PL11_DL_20120111.CEL" fields1<-strsplit(test, "_") > fields1 [[1]] [1]

Hi, I have a question concerning the analysis of some affymetrix chips. I downloaded some of the data from GEO GSE11324 (see below). In doing so I'm stuck after I identified the probesets with significant changes. I have problems in assigning probeset specific gene names as well as getting the genomic coordinates. Furthermore I have no clue how to deal with the fact, that most genes have