similar to: Memory allocation (PR#8304)

I''m using acts_as_ferret and when I call Object.find_by_contents("A & B"), Ruby dies with the following message: ^Cruby(5014,0xa000cf60) malloc: *** vm_allocate(size=1069056) failed (error code=3) ruby(5014,0xa000cf60) malloc: *** error: can''t allocate region ruby(5014,0xa000cf60) malloc: *** set a breakpoint in szone_error to debug ruby(5014,0xa000cf60) malloc:

I am using the Openbase adapter and have had a similar glitch here and there, but after I go into production I consistently get an error on one page. ActionView::TemplateError (NoMemoryError: failed to allocate memory: SELECT * FROM ... I cannot track down the exact location of the error, but the production log says it was around:

I''m using ferret (0.9.4) in rails, but outside of the "acts_as_ferret" plugin. Whenever I use a QueryFilter (even a very simple one), the server will crash after one, two, or three reloads of a page (same page, same query, same filter). It''s very non-deterministic and I can''t seem to reproduce it outside of my application environment (I can''t get it

Dear R Experts, I am using R.app (the Mac OS X binary) for neuroimage analysis, so I am loading in some large image files. I get the following error in the middle of my script: > source("3dLME.R") Read 1 record Read 1 record Read 1 record Read 1 record Read 1 record Error: cannot allocate vector of size 3.1 Gb R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed (error

Dear all, I am having a memory problem when analyzing a rather large data set with nested factors in R. The model is of the form X~A*B*(C/D/F) A,B,C,D,F being the independent variables some of which are nested. The problem occurs when using aov but also when using glm or lme. In particular I get the following response, Error: cannot allocate vector of size 1.6 Gb R(311,0xa000d000) malloc: ***

Hi, I'm Sorry for any cross-posting. I've reviewed the archives and could not find an exact answer to my question below. I'm trying to generate very large sparse matrices (< 1% non-zero entries per row). I have a sparse matrix function below which works well until the row/col count exceeds 10,000. This is being run on a machine with 32G memory: sparse_matrix <-

Hello, all, First thanks in advance for helping me. I am now handling a data frame, dimension 11095400 rows and 4 columns. It seems work perfect in my MAC R (Mac Pro, Intel Chip with 4G RAM) until I was trying to write this file out using the command: write.table(all,file="~/Desktop/alex.lgen",sep=" ",row.names=F,na="0",quote=F,col.names=F) I got the error

I want to do an unbalanced anova on 272,992 observations with 405 factors including 2-way interactions between 1 of these factors and the other 404. After fitting only 11 factors and their interactions I get error messages like: Error: cannot allocate vector of size 1433066 Kb R(365,0xa000ed68) malloc: *** vm_allocate(size=1467461632) failed (error code=3) R(365,0xa000ed68) malloc: ***

Full_Name: Eric Libby Version: 2.1.1 OS: OS Tiger Submission from: (NULL) (65.93.158.117) I am trying to analyze microarray data of 42 human arrays. I typed in the following instructions: library(affy) Data <-ReadAffy() eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, pmcorrect.method="pmonly",summary.method="liwong") And I get some

Hi Team, upgraded samba from 4.7.7 to 4.9.3 While listing AD trusted domain i got the following changes from samba 4.7 to 4.9. samba 4.9:wbinfo -m --verbose BUILTIN Local Domain Name DNS Domain Trust Type Transitive In Out SAM1 sam1.local Workstation Yes No No SAM sam.local

I would like to know if you have any suggestions how to visualize the results from a paired t-test (see the example data below). I tried to produce plots that show the mean and CI's from the original data and the estimate of the difference between means and the confidence intervals (see below) from the t-test. I really don't know what would be the best way to graphically display the

Hi r-helpers, When I issue the command latex(anova(raw1.lmer0, raw1.lmer, raw1.lmerI), file = 'raw1.tex', rownamesTexCmd = c('baR', 'addit', 'multip'), longtable = F, dcolumn = T, booktabs = T, t able.env = F, colheads = NULL, colnamesTexCmd = c ('', 'df', 'aic', 'bic', 'logl', 'chisq', 'chisqdf',

Full_Name: Dr. Hans A. Kestler Version: 1.8.1. OS: Linux, Win, Mac OSX Submission from: (NULL) (134.60.73.116) The code below produces after a different number of iterations i the following error: Error in optim(par = rep(0.5, length(edges)), loglik, method = "L-BFGS-B", : non-finite value supplied by optim This was reproducible on different machines (Mac G4 OSX, AMD Opteron

Hi all, i have the following configuration: RHAS 2.1 2.4.9-e.40enterprise #1 SMP (2 node cluster). ocfs-support-1.1.2-1 ocfs-tools-1.1.2-1 ocfs-2.4.9-e-enterprise-1.0.12-1 i followed the users guide to install and configure ocfs. During definition and formatting of ocfs-partitions the ocfstool crashed. Now restarting ocfstool fails with the following error: ocfstool Abnormal termination!

Buenas noches; Además del proyecto que comenté antes y con el que sigo discutiendo, también me estoy peleando con otro... con el que también tropiezo. Necesito reordenar los datos presentados en dos columnas a filas y columnas. Los datos ideales serían algo así: Ques <- c(rep("Q1",3),rep("Q2",3),rep("Q3",3)) Info <- rep(c("aca", "ahi",

--Apple-Mail-1--963012407 Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=US-ASCII; format=flowed Hi, I get exactly the same error message as in report no 6920. Furthermore, starting "update Bioconducter" the following message appears (running Mac OS X 10.3.4 (7H63)) : > {library(reposTools);update.packages2(getAllDeps=TRUE)} Synching your local package

Hi, FYI, I just notice that on Windows (but not Linux) it is orders of magnitude (below it's 50x) faster to serialize() and object to a temporary file and then read it back, than to serialize to an object directly. This has for instance impact on how fast digest::digest() can provide a checksum. Example: x <- 1:1e7; t1 <- system.time(raw1 <- serialize(x, connection=NULL));

I am running samba and I am trying to get it to upload/download printer drivers. When I go into the "Printers and Faxes" folder, or just "Printers" on win2k, it shows my 2 printers, on WinXP I right click on raw1 and go to properties, it asks to install the driver, if I click yes, it takes me through the add printer wizard, which lets me select my printer driver, but apparently

Hello, ive installed successfull diablo 2 LoD within X11 and wine. But now when i try to start lod it says, i need the cd to play. CD is inserted, path in regsitry is exact, mounted it successfull. In the console i get the following error: err:aspi:ASPI_GetNumControllers Could not open HKLM\L"HARDWARE\ \DEVICEMAP\\Scsi" wineserver(4712) malloc: *** vm_allocate(size=4286775296)

Hi, I want to automatically fit variograms to a large number of different sample data sets, and call the funtion "likfit" (in package geoR) from within a for-loop. "likfit" does again call "optim". After ssuccessfully fitting variograms to some of the data sets, the procedure crashes and I get the error message: Error in optim(par = ini, fn = negloglik.GRF,