similar to: Error: .First.lib failed for 'SBMLodeSolveR'

Dear R developers, Running a R CMD check under R2.2 gives me the error messages (appended to this e-mail) while the with R2.1 the check on the same package directory runs fine. To my knowledge the configuration of R2.2 and R2.1 on my machine are identical. * checking S3 generic/method consistency ... WARNING Error: .First.lib failed for 'SBMLodeSolveR' Call sequence: 2:

Hi, I am new in writing R extension. I read the "Writing R Extensions", and search online but just cannot find the answer. I am trying to add c-code, which depend on GSL C library, into my R package. I am using Max OS-X 10.4.3, powerpc-apple-darwin8-gcc-4.0.1 I begin wtih package.skeleton, and then add my c file into folder src and then add file Makevars: PKG_LIBS=-lgsl

I have a peculiar problem that I'm sure is a simple one, but I can't figure out what my mistake is. Can someone enlighten me? I have a simple file, class.R: ## setClass("abc",representation(a = "character", b = "ANY")) I have a package directory ExpressCGH1 made with package.skeleton. The package happily builds and installs, but R CMD check fails with

Dear R-users, i'm a very newbie in linux, but decided to build R from source. Following the "R Installation and Administration" manual, i did this: ./configure --enable-R-shlib # this option is here because i intend to build the GNOME console after... make make check no problems in make check, but: make check-devel #and also make check-all indicated some WARNINGs in the log

I'm seeing errors with R CMD check that I don't understand when checking a package that uses a NAMESPACE file with an import directive. The imported package is listed in the DESCRIPTION file in the Imports field. DESCRIPTION contains: Imports: arules NAMESPACE contains: import(arules) The package builds without warnings and installs and loads just fine. But check has this to

I am writing my first R package, and I have been getting the following series of errors when I run R CMD check: * checking S3 generic/method consistency ... WARNING Error: package/namespace load failed for 'REEMtree' Call sequence: 2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), call. = FALSE, domain = NA) 1: library(package,

Dear R-developers, I am trying to reproduce the autoconf.ac example from R-ext and fail. My autoconf file looks like this [autoconf.ac] # original by Friedrich Leisch, much changed by BDR AC_INIT([SBMLodeSolveR]) dnl Select an optional include path, from a configure option dnl or from an environment variable. AC_ARG_WITH([sbmlode-include],

hello, i try to create a package , and i call a library in the namespace file such as : useDynLib(quadprog) after checking my directory with the command "rcmd check" (i am on WindowsXP) i get an error: package / namespace load failed the path of the library is: D:\R\library\quadprog the path of the building files is: D:\RBuild\svcR and the comand i use to compile is: rcmd

Hello, I have a very minimal package "simplepkg" (DESCRIPTION, NAMESPACE, and R) with S4 classes/methods (defines a class "foo" and a show method for that class" - both the class and show method are exported). I can seemingly install the package, then load and use it: > sessionInfo() Version 2.3.1 (2006-06-01) sparc-sun-solaris2.10 attached base packages: [1]

Hi all, I have a working package for linux, including fortran 95 code compiled with g95, that I need to port to OS X. The package works on Linux and seems to load on the Mac, but when I try to run a function that calls C or Fortran I'm told that the symbol is not loaded. I'm developing via a shell account on an OS X system, I don't have access to a desktop. The set up is: R

I am a little confused about the relationship between library.dynam and dyn.load >From the documentation: library.dynam(chname, Load the specified file of compiled code if it has not been loaded already, or unloads it. Where chname is a character string naming a shared library to load. and dyn.load(x, local = TRUE, now = TRUE) Load or unload shared libraries, and test whether a C function

Hola Quiero ejecutar R desde Jupyter Lab y me encuentro con un error al invocar la librería dplyr. Este error no aparece cuando ejecuto RStudio. La sesión de R en jupyter lab: sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 14393) Matrix products: default locale: [1] LC_COLLATE=Spanish_Chile.1252

Dear R-developers, Using .Call I pass a S4 class with e.g. the following class definition: setClass("mmatrix",representation( data="matrix") ) On the "C side" i do mat = GET_SLOT(vs,install("data")); and then: printf("%f\n",NUMERIC_POINTER(mat)[1]); The above print statement produces the correct output if xx<- new("mmatrix")

Hi guRus, i'm running R-2.15.1 and the R CMD CHECK output appears to have changed substantially, in that instead of pointing me to the offending functions or files, I get lots of 'call sequence' traces as below. I've been using R CMD CHECK for years & never seen anything like this before. This is on a pretty fresh OSX 10.8 Mountain Lion installation, where I installed R from

Dear R-helpers, The function optim implements algorithms that I would like to use. I have function implemented in R, which given the parameters of which minimization is to take place returns a scalar as well as the gradient. Unfortunately optim requires two function _fn_ and _gr_ where fn returns the function value and gr the gradient. Splitting my function in two functions would be easy,

Hello, I have a package with a namespace. Because I use Roxygen that overwrites the NAMESPACE file each time it is run, I use a R/zzz.R file with an .onLoad() and .onUnload() functions to take care of loading and unloading my shared library. The problem: if I load my library from a local directory, then the unloading of the package fails, e.g: # loads fine >library(Foo,

Hi, With R version 2.13.0 alpha (2011-03-24 r55004), 'R CMD check' will produce the following output on some packages: * checking Rd metadata ... WARNING Error in is.function(FUN) : 'FUN' is missing Calls: print ... format.check_Rd_metadata -> unlist -> lapply -> match.fun Execution halted This is happening on packages that contain duplicated \name or

Calling library(..., quietly=TRUE) may still output: Loading required package: <other pkg> in some cases, e.g. > library("R.utils", quietly=TRUE) Loading required package: R.methodsS3 [...] I traced this to base:::.getRequiredPackages2(), which forgets to pass 'quietly' to an internal library() call: if (!attached) { if (!quietly)

I've noticed that many of the "base" R packages have an .onUnload() function which automatically unloads compiled shared libraries with library.dynam.unload(). For example: > stats:::.onUnload function (libpath) library.dynam.unload("stats", libpath) <bytecode: 0x1033b9c30> <environment: namespace:stats> I've noticed that many other packages don't

I am creating an R package. I ran R CMD check on the package, and everything passed until it tried to run the examples. Then, the result was: * checking examples ... ERROR Running examples in REEMtree-Ex.R failed. The error most likely occurred in: > ### * AutoCorrelationLRtest > > flush(stderr()); flush(stdout()) > > ### Name: AutoCorrelationLRtest > ### Title: Test for