similar to: bug loading libraries with winXP and 2.2.0 but not 2.1.1 (PR#8200)

Hi, thanks for the report - but it should have gone to the Bioconductor list, and the package maintainer, thanks. New versions of multtest and a few other packages will percolate up in the next few days to resolve the problem. Best wishes, Robert kompass at vision.wustl.edu wrote: > Full_Name: Ken Kompass > Version: 2.2.0 > OS: winXP pro (2002 version, SP2) > Submission

Hi, I am using SAM (from siggenes_1.2.11 package) method to select genes from a microarray data set. After installing the latest R2.4.0 on my computer, to my surprise the results are totally different from that calculated using R2.1.1. Even the example code doesn't work the same way under these two versions of R. Does anybody know what is going on? Thanks for any suggestions.

To All How does one get a list of functions from a loaded package so that one can then get the appropriate help for each of the functions. Currently my method is based on a lot of trial-and-error. Here's an example of what I mean... >From this forum I learn that an interesting package called "multtest" exists on Bioconductor. I then use R Console's "Packages" --

Hello! I downloaded a package "multtest" (from bioconductor.org) in R, and installed it by 'R CMD <package>' (after unzipping and taring). The problem is when I say 'library(multtest)' in R, the following error is generated: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

I have been running R CMD check for the first time on of our own packages, which otherwise builds, installs and runs just fine. The package depends on package akima and suggests package multtest; suggesting multtest is indicated because a) it loads a lot of other Bioconductor packages, very slowly, and b) it is only needed for one specific subroutine, which executes require(multtest)

Hi, Installing from binaries on Windows: > install.packages("multtest") Warning: dependency 'Biobase' is not available trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.12/multtest_2.6.0.zip' Content type 'application/zip' length 1645590 bytes (1.6 Mb) opened URL downloaded 1.6 Mb package 'multtest' successfully unpacked

Hi, With recent versions of R-devel, "R CMD check" complains about some "Rd files with unknown sections". hpages at gladstone:~> R CMD check multtest_1.9.4.tar.gz ... ... * checking Rd files ... WARNING Rd files with unknown sections: /home/hpages/multtest.Rcheck/00_pkg_src/multtest/man/boot.resample.Rd: notes

Hi Nguyen, > Subject: [R] install "multtest" and "preprocessCore" packages in > Bioconductor library > Date: Wed, 30 Nov 2011 09:57:36 -0800 > From: UyenThao Nguyen <unguyen at tethysbio.com> > To: r-help <r-help at r-project.org> > CC: uth.nguyen at ucdavis.edu <uth.nguyen at ucdavis.edu> > > Hi All, > > I've tried to

I've run into a problem with dir.create on R2.2.0 Windows XP 2002 SP 2. setwd("d:/") print(dir.create("d:\\otis-sim\\rdata", recursive=T)) print(dir.create("d:\\otis-sim\\", recursive=T)) Both return false and fail to create the directories. setwd("c:/") print(dir.create("d:\\otis-sim\\rdata", recursive=T)) Returns true and succesfully

Full_Name: foo ba baz Version: R2.2.0 OS: Mac OS X (10.4) Submission from: (NULL) (219.66.32.183) chisq.test(matrix(c(9,10,9,11),2,2)) Chi-square value must be 0, and, P value must be 0 R does over correction when | a d - b c | < n / 2 &#65292;chi-sq must be 0

Colleagues, I have created a list in the following manner: TEST <- list(c("A1", "A2"), c("B1", "B2"), c("C1", "C2")) I now want to delete one element from the list, e.g., the third. The command TEST[[3]] yields (as expected): [1] "C1" "C2" The command TEST[[-3]] yields: Error:

Hi all, please don't ask me why I tried this but....... I have observed some odd behaviour in the time taken to read a file. I tried searching the archives without much success, but that could be me. The first time I read a (60Mb) CSV file, takes a certain amount of time. The second time takes appreciably longer and the third and subsequent times very much shorter times. See below, $

Yesterday, I installed R2.2.0 for Windows [Version 2.2.0 (2005-10-06 r35749)]. Unfortunately, 'install.packages("Matrix")' produced the following message: Warning in download.packages(pkgs, destdir = tmpd, available = available, : no package 'Matrix' at the repositories I installed lme4, maps, mapproj, CircStats, scatterplot3d, gregmisc, Hmisc without

Hello, when I work in R, I write code in a text file that I run with the "source(filename)" command. In R2.1.1 the file is read-only while the source command is executed. This was not the case in R2.0.1. Is this a bug-fix or is it possible not to have the file read-only when executed? Best regards Vidar

Hallo I encountered a behaviour which puzzles me (but finally I did get what I wanted). I used structable and strucplot but I wanted to change names of variables in structable object. I tried to subset it, use names but to no avail. So I tried str and expected to get a structure of an object but: > sss<-structable(Titanic) > str(sss) Error in "[.structable"(x, args[[1]],

This is R2.1.1 The documantation opened by ?ar, section for returned value, does not document all the components of the returned list. In addition to the 13 components documented, it also contains the component $frequency This also applies to the help page opened by ?ar.ols -- Kjetil Halvorsen. Peace is the most effective weapon of mass construction. -- Mahdi Elmandjra

Hello all, R2.1.1, Wk2 I am doing some two-step plotting, first using plot() to illustrate the datapoints and then using abline() to place a trend line from a fitted model into the plot. Everything works well as long as the formula of the fitted model i of the type: m1 <- lm(Dependent ~ Independent) then abline(m1) puts the proper straight line into the plot. But if I use: m2 <-

Hi everyone, Can someone explain me how to calculate SAS type III sums of squares in R? Not that I would like to use them, I know they are problematic. I would like to know how to calculate them in order to demonstrate that strange things happen when you use them (for a course for example). I know you can use drop1(lm(), test="F") but for an lm(y~A+B+A:B), type III SSQs are only

Full_Name: Utz J. Pape Version: 2.2.0 OS: linux Submission from: (NULL) (141.14.23.12) If I use phyper and set parameter x equal to k (meaning that all balls I draw are white) phyper returns 1 which is not (always) correct: pape at xxx:~> R2.2.0 --vanilla R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.0 (2005-10-06 r35749) ISBN 3-900051-07-0 R is free software

R2.1.1 Win 2k I have a function, B, within a function, A. I would like to have B print the name of the argument passed to it (not the value of the arguments). i.e., A<-function() { B<-function(x,y) { fit1<-lm(y~x,data=jo) print(summary(fit1) I want B to print the string "age" and the string "height". } B(age,height) }