Displaying 20 results from an estimated 200 matches similar to: "Build R with ATLAS"
2006 May 18
0
R-devel and PGI 6.0 compile error
I am trying to compile R-devel (R-devel_2006-05-17.tar.gz) on Red Hat
Enterprise Linux AS release 3 (Taroon Update 7) using the Portland Group
compiler 6.0. (I have not yet successful compiled R on this
configuration, so I don't know if this is a new problem.) I get an error
pgcc -L/usr/local/pgi/linux86-64/6.0/libso -L/usr/lib64 -o dftables
dftables.o
../dftables chartables.h
2006 Mar 09
1
R2.2.1-patched build failed with PGI 6.1 on x86-64
Hi All,
While attempting to build R-patched using the Portland Group compiler suite
on our dual Opteron 250 box running Scyld 29cz5 (based on RH, kernel
2.4.29), I get:
make[5]: Leaving directory
`/home/andy/Rbuild/R221-pgi/src/library/tools/src'
make[5]: Entering directory
`/home/andy/Rbuild/R221-pgi/src/library/tools/src'
pgcc -I../../../../include -I/include -I/include/CC -fpic
2006 Mar 10
2
problem building R-patched on x86-64 with PGI 6.1
Dear R-devel,
[I'm not sure if this is appropriate for R-devel. If not, I'm more than
happy to move it to R-help.]
As those of you who saw my post on R-help know, I've been trying to build
R-patched on a dual Opteron box running Scyld Beowulf, using the PGI 6.1
compilers. The build went fine, but I couldn't get it to pass make
check-all. Jennifer Lai, who reported success with
2009 Feb 11
1
Problem with R using pgi compiler on x86_64
Hi,
we have installed R-2.8.1 using the current pgi compiler (8.0.2) for
AMD64 on a SLES9 system.
When I try to install "Matrix" everything is fine until the last step.
make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD'
pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so
CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o
chm_common.o
2006 May 11
0
PGI 6.1 compile error
I am trying to compile R-2.3.0 (both first release and patched
2006-05-10) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7)
using the Portland Group compiler version 6.1 and the notes from
Jennifer Lai on p33 of "R Installation and Administration" version 2.3.0
(2006-04-24). I have not used this compiler before, so it is possible
things are messed up more than usual, even
2005 Aug 23
1
compile R with Portland Group compiler
Hi,
Can anyone advise me on how to compile R with Portland Group
compiler on a Opeteron machine with Red Hat Enterprise Linux WS release
4 installed?
I've edit config.site file to pick portland group compilers instead of
gcc. Here is the list of modified flags:
CC=/usr/pgi/linux86-64/6.0/bin/pgcc
CFLAGS='-g -O2'
CPPFLAGS='-I/usr/pgi/linux86-64/6.0/include
2006 Sep 27
1
Building R-2.3.1 for Windows with ATLAS
Ok, moved to R-devel.
I tried to build R-2.3.1. Since I intent to distribute this tuned R to
all other who have a computer like mine here at work I thought it was
best to stay with the latest stable release.
About your suggestion, I could'n find xerblas.o file. And I don't know
how to edit libf77blas.a. I tried to open it with VIM
(http://vim.sf.net/) but there was a lot of strange
2006 Jan 13
1
Problems installing R 2.2.1
We are trying to install R2.2.1 on a IBM P655 Cluster, SuSE LE 9.1
We are using gcc v 3.3.3
and we are getting this error on make
g77 -fPIC -g -O2 -ffloat-store -c dlamc.f -o dlamc.lo
g77 -fPIC -g -O2 -c dlapack0.f -o dlapack0.lo
g77 -fPIC -g -O2 -c dlapack1.f -o dlapack1.lo
g77 -fPIC -g -O2 -c dlapack2.f -o dlapack2.lo
g77 -fPIC -g -O2 -c dlapack3.f -o dlapack3.lo
g77 -fPIC -g
2005 Aug 31
1
Build Portland Group Compiler
Hi,
I built R with Portland Group compiler, but I noticed one thing that
when I ran configure for the first time on AMD machine, I got the
following error:
checking whether the C compiler works... configure: error: cannot run C
compiled programs.
If you meant to cross compile, use `--host'.
See `config.log' for more details.
so I tried to set host=x86_64-unknown-linux-gnu,
2010 May 14
1
Compiling R with ATLAS
Hello. I know almost nothing about Linux, so I apologize if the answer to
this is obvious.
I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu
10.04 64 bit). I configured with:
./configure --enable-R-shlib --enable-BLAS-shlib
--with-blas="-L/usr/local/atlas/lib -lf77blas -latlas"
--with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x
and I
2010 May 14
1
Compiling R with ATLAS
Hello. I know almost nothing about Linux, so I apologize if the answer to
this is obvious.
I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu
10.04 64 bit). I configured with:
./configure --enable-R-shlib --enable-BLAS-shlib
--with-blas="-L/usr/local/atlas/lib -lf77blas -latlas"
--with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x
and I
2006 Sep 26
1
Building R for Windows with ATLAS
I think this is not a R-devel question. Sorry to all if I'm wrong,
please let me know.
I managed to build R successfully with the default BLAS but when I
change the MKRULES to use ATLAS BLAS and set the path to
"C:/cygwin/home/Administrador/ATLAS/lib/WinNT_ATHLONSSE2" I got the
following error message (I'm posting only the final part, there was a
lot of compilation before this):
2010 May 28
2
Compiling R-2.11.0 with ATLAS-tuned BLAS and LAPACK
Hello. I am a Linux neophyte and know almost nothing ?about compiling,
so I would appreciate any help and advice y'all would care to offer.
I am trying to compile the 64 bit version of R using a tuned ATLAS and
LAPACK (ATLAS 3.9.24). I am running Ubunto 10.04 LTS (through wubi,
FWIW). The ATLAS and LAPACK files (atlas.so, f77blas.so, lapack.so,
and cblas.so) are sitting in the folder
2010 Nov 13
1
LAPACK lib problem, lme4, lastest R, Linux
I just dumped Vista off a laptop and installed Ubuntu 10.10 (latest
release) as the single operating system. I did all of the updates and
then installed emacs and ess. Next I installed R by following the the
usual instructions on the CRAN site. At this point all is working I am
now in the process of installing the packages that I normally have
installed. I am having a problem with the LAPACK
2010 Nov 14
3
LAPACK libraries improperly linked
I am not sure if this is an R development problem or not. I am starting
with completely clean OS and and installing the latest version of R
without trying to anything special but I am having trouble with the
LAPACK library linking when I try to build packages that require them.
I thought perhaps my problem may be if interest here.
I just dumped Vista off a laptop formatted the disk and
2004 Feb 26
2
ATLAS threaded 64 bit (Opteron) - need *.so?
Using ATLAS with R is an old topic quite covered in the "R
Administration" manual (and by R's "configure" script
collection).
I still do not easily manage to build R properly on our new AMD
Opteron (2-processor).
I did work with the current Atlas 3.6.0, configured manually
(but "express" version) to build a threaded ATLAS version, and
successfully ran Atlas'
2011 Sep 05
1
Receive "unable to load shared object RNetCDF.o" during R INSTALL of RNetCDF
On a Red Hat Linux cluster I am seeing the following after multiple
other packages were successfully installed. The error seems to suggest
that RNetCDF.o was not copied to the appropriate lib folder. The admin
user performing the install has the required privileges to perform the
install. Words of wisdom are greatly appreciated:
R CMD INSTALL
2006 May 18
1
Stuck in R installation, help~~
Hi all,
I'm stuck in the installation of R.
When I run configure, I got the error:
configure: error: --with-readline=yes (default) and headers/libs are
not available
I followed one answer in some post and use this:
./configure --with-prefix=/home/user/R-2.2.1 --with-readline=no
It successfully configured but I encountered another problem while make:
gcc -shared -L/usr/local/lib64 -o
2001 Jan 26
2
Debian install : libf77blas.so missing
Hi,
I tried installing R on my system (Debian Linux 2.2.17, i386).
I find that libf77blas.so is missing. Can someone tell me where
and how I can find this? A search in debian.org didnt turn up anything.
Anyway help will be greatly appreciated.
Thanks,
Anand
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2006 May 03
1
Installation problem
I am trying to install R-2.3.0 on a 64bit linux box and encounter
several error during the make step. I'd appreciate any help. Error
messages follow:
[root at calculon R-2.3.0]# make
make[4]: Entering directory
`/state/partition1/apps/packages/R-2.3.0/src/modules/lapack'
gcc -shared -L/usr/local/lib64 -o libRlapack.so dlamc.o dlapack0.o
dlapack1.o dlapack2.o dlapack3.o cmplx.o