similar to: Problem with limmaGUI (PR#7877)

Dear all, I have a question about limmaGUI that is usually run in R environment. My problem is loading data into the programm. I have 6 gpr files that apparently are not compatible with limma. Everytime I'm trying to load the data (including a RNA targets file, an error appears:Error reading files. that I'm not sure,but seems to have something to do with the format of my files

Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen before for multiple time points (when the venn-diagram is more relevant) Any ideas what is going on?

[PLEASE REPLY _OFF_ THE LIST, i.e. DON'T CC to r-help at ...] Hi, I don't see this sort of thing very often on the mailing lists, so list moderators and others should feel free to tell me if it breaches list etiquette and/or delete my post if necessary. But I can't see what harm it could do... I am just wondering approximately how many people use / have used some of the R stuff

Hi, I'm using rw2000dev.exe (Win32) built on August 14. If this isn't already planned, can I suggest that when checkS3methods() (called by R CMD check) fails because of a syntax error in a dependent package listed in the DESCRIPTION file of the main package being checked, it would be nice if checkS3methods() reported which dependent package caused it to fail? Running R CMD check on my

Dear R-helpers, I have installed the latest version of R 2.1.1 in the Tiger OSX. However, when I load up R and use the following command: > library(tcltk) I encounter the following error: Loading Tcl/Tk interface ... Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/Library/Frameworks/R.framework/Resources/library/tcltk/libs/tcltk.so':

Hi, I'm one of ubuntu indonesian muslim users. The truth is; all of kind software piracy is forbidden in our religion, some people who care this rule get an OS migration. But there are a problem, the best Islamic software "Maktabah Syamilah" doesn't run perfectly, take a look at the screenshots! This is maktabah syamilah on windows: [Image: http://i44.tinypic.com/iqyo48.png ]

I am the maintainer of a Bioconductor package (affylmGUI) which uses tcltk. It freezes inconsistently on MS Windows, but not Mac or Unix. see details below. After considerable testing I have reduced the problem from a few thousand lines of code to 30 lines! If you paste the following lines of code into an R window: testGUI <- function(){ require(tcltk) MainWindow <-

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>> since a week or so, the images generated by doxygen on llvm.org have their >> font size increased a bit, such that the text doesn't fit in the boxes anymore >> (and is overlapping and such). This makes the diagrams a bit hard to read. Any >> chance of fixing this? > Nobody to fix this? Unfortunately, I am the only one who can fix this :) That will happen when I

Good day all I am working with samba4.2.1 DC, created after upgrading from samba3 the DC works fine, however the commands : "getent passwd" and "getent group" reports only local users. however I am able to see all the id from the ccdc domain with the command "id" root at ccdc-samba4:~# id rocheian uid=3439(rocheian) gid=513(domain users) groups=513(domain

Hello,I have single linux router ( fedora core 1 ), 2 ISP, 1 internal network,1 IP space from every ISP My scenario: eth0 1.0.0.2 netmask 255.255.255.252 -> ISP 1 eth1 2.0.0.2 netmask 255.255.255.252 -> ISP 2 eth2 1.0.1.1 netmask 255.255.255.0 -> IP space from ISP1 eth3 2.0.1.1 netmask 255.255.255.0 -> IP space from ISP2 Config I try: /etc/iproute2/rt_tables: 10 isp1 20 isp2 ip

Hi all, I'm working on microarray and currently analyzing the microrarray data using limmaGUI. Loop design has been applied in this experiment. This is a 2X2 factorial experiment where there are control and treatment at 2 different time points, week 6 and 9. The experimental design is almost the same as the limmaGUI work example: Weaver Data set. I would like to look at the effect of

well, I have configured the kdc client on the file server, joined the domain using net ads join and it worked fine, again getnet group , getnet passwd , wbinfo -u they all works perfectlly fine I am also able to browse the shares from any windows machine joined to the CCDC domain, but I am still not able to do ANY mount.cifs, not even form linux boxes joined to the domain :-/ I have no idea

I have some more findings about this it looks like getent does not get the right information from the Domain Controller, in fact the domain user groups shows with NO member users: getent group | grep "domain users" domain users:x:10000: root at seadog:~# Now funny thing is that other folders for wwhich getent retrieves the users correctlly are mounted fine . any idea why I don t see

ok, what do you suggest then? maybe changing the authentication to another group like "domainusers" ? ___________________________________________________________________________________________ Mario Pio Russo, System Admin SWG IT Services Dublin, Phone & FAX: +353 1 815 2236, eMail: mariopiorusso at ie.ibm.com IBM Ireland Product Distribution Limited registered in Ireland with

My machine has 4Gb of memory under WinXP Pro. Re-reading R for Windows FAQ 2.7 I discovered that I can use editbin to add the "/LARGEADDRESSAWARE" tag in the header without re-compiling, so that is what I did. I also check that it worked using dumpbin. I then edited my Boot.ini file to add the /3GB switch. Then I went to my R.0.0.1 patched that I modified as above and checked memory

Hello, Following a discussion initiated on r-devel, that mentions SciViews-R and other GUIs issues for R, I would like to make comments (and would be happy if these comments would initiate interesting initiatives). A big, big problem with SciViews-R is that a part of it is written in Visual Basic 6, a M$$$$ language, not supported any more, buggy, non transposable to other platforms, etc,

On 15/07/15 15:10, Mario Pio Russo wrote: > OR > > is there any way, or magical hidden parmeter in the smb.conf that allows to > enumerate the users in the Domain Users? tbh this has a huge impact on the > file share server as many directorys have "domain users" as group I don't think you understand this at all :-) If a user is a member of an AD domain, then they are

I need to select rows form a table based on the first letter of the name column. Like a teledex there will be a letter provided by a request. Currently i have @artists = Artist.find(:all, :conditions => [ ''LOWER(name) LIKE ?'', ''%'' + params[:id].downcase + ''%'' ], :order => ''name ASC'',

Hi! We are developing an application in which the plugin acts_as_taggable can be loaded or not. So we need to know if the plugin is loaded in order to call the acts_as_taggable function en the model definition. We have found a not so elegant solution: class Post < ActiveRecord::Base acts_as_taggable if defined? Tag .... end That is, check if the class Tag (a class that creates the