similar to: ncdf with opendap/dods support

Hello, I was wondering if there has been any progress in developing a package for accessing opendap/dods data using R. I see from the list archive that there was some initial work done on this. Thanks, Paul Brewin Paul E Brewin (PhD) Center for Research in Biological Systems University of California San Diego 9500 Gilman Drive MC 0505 La Jolla CA, 92093-0505 USA Ph: 858-822-0871 Fax:

Hi: Russ Moffit of our Honolulu Lab has made a modification to the R netcdf package 'ncdf' so that it can access remote netcdf files using OPenDAP (http://www.opendap.org). The package works on Linux, and with help from Don MacQueen was also ported to Macintosh OS X. We have had a lot of demand for this to be ported to Windows also, but it is beyond our capabilities. If there is

I am in the process of converting from Matlab to R, but a major sticking point for me at the moment is accessing data via OPeNDAP. After several hours of searching, I found that other people have discussed this functionality in the past, but it does not appear to have yet been developed. One programmer, Luke Miller, has managed a work-around by downloading ascii data from an OPeNDAP site (

Friends, I tried to install ncdf package in ubuntu with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include -with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz The installation was stopped throwing the following error. I tried to google it but didnt find any solution. someone kindly write me what is going wrong. **

Hi, I am using the package ncdf to create netCDF files and I want to mimic the the header of an exiting netCDF file created outside of R. Below is what the existing header looks like (part of it that is different): netcdf ccd1984_05_08 { dimensions: lat = 1974 ; lon = 1894 ; time = UNLIMITED ; // (1 currently) variables: int time(time) ;

How to programmatically (i.e., without no or minimal handcoding) copy a netCDF file? (Without calling > system("cp whatever wherever") :-) Why I ask: I need to "do surgery" on a large netCDF file (technically an I/O API file which uses netCDF). My group believes a data-assimilation error caused a data variable to be corrupted in a certain way, so I'm going to

Dear All, I recently got a 64bit machine and had netcdf-3.6.2 installed. Then I tried to install ncdf package but got the following error message when using netcdflib: gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include -I/home/ljin/share/R-2.6.1/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include

Hello I'm trying to install the "ncdf" package on a Ubuntu 10.04 laptop. Can you offer suggestions to install this package? > install.packages("ncdf", repositories = TRUE) Installing package(s) into ‘/home/steve/R/i486-pc-linux-gnu-library/2.12’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done

Dear R users I am attempting to add lncdf_1.6.tar.gz libraries within R, and have failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux 2.6.293.-60.fc10.x86_64. I've run R CMD INSTALL ncdf_1.6.tar.gz and I have the following --------------- * Installing to library '/usr/lib64/R/library' * Installing *source* package 'ncdf' ... checking for gcc... gcc

Dear all, I would like to use data in .netcdf format and for those I have to use the netCDF or ncdf packages. Problem : these packages don't seem to work : "Error in testRversion(descfields) : This package has not been installed properly See the Note in ?library" (with netCDF package) Does anybody have the same problems with these packages ? Is there any

Hi I used the command R CMD INSTALL ncdf to install ncdf package in linux. Can somebody explain to me what might be wrong. Thanks. Below is the error. * Installing *source* package 'ncdf' ... Special note: checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for

Dear all, I have a problem in writing a variable to a NetCDF-File. My code works pretty well until the step put.var.ncdf(): # Get variables #--------------------- data1 <- open.ncdf("PREC_me_03-1500.nc") prec1 <- get.var.ncdf(data1,"PRECT") dim.time <- get.var.ncdf(data1,"time2") close.ncdf(data1) # Calculation #--------------------- spi24.me <-

Dear R communities Could you please help me with the problem I encounter while trying to install the ncdf package? download.packages("ncdf", "/home/user/soft/R/library/") cd /home/user/soft/R/library R CMD INSTALL ncdf_1.6.tar.gz # fail sudo R CMD INSTALL ncdf_1.6.tar.gz # fail cd /home/user/soft/ # download

I've a linux system with 2Gb of memory which is not enough for reading a 446Mb netcdf file using ncdf: library(ncdf) ncold <- open.ncdf("gridone.grd") Error: cannot allocate vector of size 1822753 Kb When I look at the free memory in my system I can see that none of the Swap space is being used by R. I am a newbie in linux and R, I've read the Memory help pages but still

Should one ask questions relating to the R package 'ncdf' here? or look for a more netCDF-oriented (but probably less R-oriented) list? Why I ask: I'm relatively new to R, which I've only used in the past for graphics. I'm trying to learn R as an alternative to manipulating netCDF files with NCO (which works well but lacks all the other R goodnesses). Hence I've got a

Hi All, I am trying to install ncdf package on a Linux 64-bit machine. I successfully installed netcdf using this command, ./configure --prefix=/home/challar/netcdf/ --disable-netcdf4 I then tried to install ncdf package in R R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz I get this

Dear all, I'm having issues with the installation of the ncdf package. It returns a non-zero exit status. Can anyone suggest what I should do next? FYI, I do not have problems installing other packages. Thanks. Muhammad * installing *source* package ?ncdf? ... checking for nc-config... /usr/local/bin/nc-config configure: creating ./config.status config.status: creating src/Makevars **

Hi there, I'm more or less new to R and have just installed R on my MAC laptop. I managed to install everything easily enough (R version 2.9) and a few packages, but when I try to load the ncdf package (in R) I get the following error: library(ncdf) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library

Dear R Users, I am encountering a problem when reading nc files into R using the ncdf and ncdf4 libraries. The nc files are too large to attach an example (but if someone is interested in helping out I could send a file privately via an online drive), but the code is basic: for(i in 1:length(thesenames[,1])){ data <- nc_open(paste(INDIR, thesenames[i,c("wholename")],

On Fri, Apr 22, 2016 at 1:32 AM, Louise Mair <louise.mair at slu.se> wrote: > Dear R Users, > > I am encountering a problem when reading nc files into R using the ncdf > and ncdf4 libraries. The nc files are too large to attach an example (but > if someone is interested in helping out I could send a file privately via > an online drive), but the code is basic: > ?[...]?