similar to: utils::setRepositories bug when adding a local repository? (PR#7810)

Hello, Is it possible to change the default repositories? I've already changed the list in the repositories file under etc/ this is how my repositories file under R/etc looks like: row name menu_name URL default source win.binary mac.binary CRAN CRAN @CRAN@ TRUE TRUE TRUE TRUE BioC Bioconductor http://www.bioconductor.org TRUE TRUE TRUE FALSE

I have some questions and observations about these: Will these replace manually setting options(CRAN), which doesn't work in R-2.1.0? In R-2.1.0, setRepositories() looks to see if options("repos") contains a CRAN entry and will not override that CRAN entry even if the $R_HOME/etc/repositories file (which setRepositories reads from) contains a CRAN entry. Why is this? The user

I currently set the Bioconductor repository in my .Rprofile using this code (which needs editing for every version number change of Bioconductor): # Choose repositories repos <- structure(c(CRAN="http://streaming.stat.iastate.edu/CRAN", CRANextra="http://www.stats.ox.ac.uk/pub/RWin",

Hi, On a new pc, I am trying to 'CHECK' an R package containing only R code but the process is hanging and I cant see why. The 00check.log file shows * using log directory 'c:/temp/opRisk.Rcheck' * using R version 2.2.1, 2005-12-20 * checking for file 'opRisk/DESCRIPTION' ... OK * this is package 'opRisk' version '0.2' * checking if this is a source

Full_Name: Richard Calaway Version: 2.9.2 OS: Windows Vista Submission from: (NULL) (65.47.30.18) If you call setRepositories(graphics=TRUE), or, equivalently, choose "Select repositories..." from RGui's Packages menu, and then click "Cancel", you are dropped to the command line menu. Choosing "Cancel" should drop you back to the top-level prompt. Also, the

Hi, again- But I see the behavior has been fixed in the current R-devel build, so sorry for the noise, and thanks for keeping R such a great package! --Rich Calaway _____________________________________________ From: Rich Calaway [mailto:richcalaway at revolution-computing.com] Sent: Wednesday, September 23, 2009 12:32 PM To: 'R-bugs at R-project.org' Subject: RE: Bug 13937

Dear All   I have the following code set up: Code #1 a <-matrix(seq(0,8, by = sign(8-0)*0.25)) b <-matrix(seq(8,16, by = sign(16-8)*0.25)) c <-runif(1000,50,60) d <-exp(-c*a)+exp(-c*b)   This will give me the obvious error message of lengths not matching. What I am trying to do here is to have 33 rows x 1000 columns d values calculated in total. As an eaxmple for visual, this is what

Hi list, This looks similar to the problem reported here https://stat.ethz.ch/pipermail/r-devel/2006-April/037199.html by Henrik Bengtsson a long time ago. It is very sporadic and non-reproducible. Henrik, do you remember if your code was using reg.finalizer()? I tend to suspect it but I'm not sure. I've been hunting this bug for months but today, and we the help of other Bioconductor

Hi everyone, My apologies if this isn?t the right place to submit this?I?m new to the R-devel community and still figuring out what is where. If people want to skip my writeup and just look at the code, I?ve made a repository for it here: https://github.com/ahl27/new_dendrapply/tree/master. I?m not quite sure how to integrate it into a fork of R-devel; the package structure is different from

Thank you. What I need to do to address this? Open an issue on bugs.llvm.org? I'm not sure what the fix needs to be in the cloner. On Thu, Jun 8, 2017 at 4:19 PM, Peter Collingbourne <peter at pcc.me.uk> wrote: > There have in the past been bugs in the cloner involving duplicate > DICompileUnits (see e.g. https://reviews.llvm.org/D29240), this one may > need a similar fix.

All, I'm seeing duplication of DICompileUnits in a pass that worked in 3.8. I assume I'm doing something wrong. Would someone be willing to point me in the right direction? The below minimized pass reproduces my issue in 4.0 with the following error: DICompileUnit not listed in llvm.dbg.cu !1707 = distinct !DICompileUnit(language: DW_LANG_C_plus_plus, file: !1, producer: "clang

Hello: I've been using "Rprofile.site" for several years to set the repos environment variable as follows: options(repos=c(CRAN='http://cran.cnr.berkeley.edu', CRANextra='http://www.stats.ox.ac.uk/pub/RWin') ) However, R 2.15.0 is not recognizing this. Instead, I get the following: options('repos') $repos

On 08/25/2015 12:54 PM, Kevin Ushey wrote: > Hi all, > > The following fails for me (on OS X, although I imagine it's the same > on other platforms using libcurl): > > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = > "http://www.stats.ox.ac.uk/pub/RWin")) >

Hi all, The following fails for me (on OS X, although I imagine it's the same on other platforms using libcurl): options(download.file.method = "libcurl") options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = "http://www.stats.ox.ac.uk/pub/RWin")) install.packages("lattice") ## could be any package gives me: >

On 08/25/2015 01:30 PM, Kevin Ushey wrote: > Hi Martin, > > Indeed it does (and I should have confirmed myself with R-patched and R-devel > before posting...) actually I don't know that it does -- it addresses the symptom but I think there should be an error from libcurl on the 403 / 404 rather than from read.dcf on error page... Martin > > Thanks, and sorry for the

In fact, this does reproduce on R-devel: > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = + "http://www.stats.ox.ac.uk/pub/RWin")) > install.packages("lattice") ## could be any package Installing package into ?/Users/kevinushey/Library/R/3.3/library? (as ?lib? is

Hi, I'm new to R. Apologies if this is a simple query, I've searched the mailing lists and docs but can't find a solution to my problem. I'm trying to make some packages available on our intranet. During development the 'intranet' is a webserver running on localhost. * When I call "install.packages" I get a mesage about not being able to access 'index

Hi Martin, Indeed it does (and I should have confirmed myself with R-patched and R-devel before posting...) Thanks, and sorry for the noise. Kevin On Tue, Aug 25, 2015, 13:11 Martin Morgan <mtmorgan at fredhutch.org> wrote: > On 08/25/2015 12:54 PM, Kevin Ushey wrote: > > Hi all, > > > > The following fails for me (on OS X, although I imagine it's the same >

Hello, I was wondering if anyone has run across this problem in the past and might be able to suggest a solution. I did a review of the FAQ's link trying to find a topic that closely related to the experience I was having, however I didn't see anything that might help in diagnosing the problem. While invoking the options under the "package" menu I get the following errors:

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes