similar to: RE: problem with R CMD build--FIXED (PR#7241)

Hello, This may not be a bug--but I'm not sure. I have R 1.91 installed on a machine that's running Windows XP. In Cygwin, when I attempt to use the "build" command it tells me that TMPDIR is set to an invalid directory. See the results below: stat20:/cygdrive/d/dirk/bands/implementation -> which r /cygdrive/d/Programs/R/rw1091/bin/r

The following is a patch (svn diff) for the R CMD build script that calculates exclude patterns after the tar/untar step rather than before. The perl find() function, used in the calculation of the exclude patterns, ignores symlinks, which meant that directory symlinks were not considered for exclusion. Since the tar/untar step resolves (copies) symlinks, this works around that limitation.

I am building R packages using R 1.7.0pat under Windows 2000 Professional. All works fine except that I haven't been able to figure out how to use the --docs=TYPE option. I would like to optionally turn off building chm help. I have tried build commands like rcmd build --binary --docs=TYPE mypackagename In place of "TYPE" I have tried things like "html",

Hi All, How do i calculate KMO for a dataset? *Dataset:---------------------* m1 m2 m3 m4 m5 m6 m7 m8 1 2 20 20 2 1 4 14 12 2 9 16 3 5 2 5 5 15 3 18 18 18 13 17 9 2 4 4 7 7 2 12 2 11 11 11 5 7 8 5 19 5 2 20 18 6 7 4 7 4 7 9 3 3 7 5 5 5 12 5 13 13 12 8 6 6 4 3 5 17 17 16 9 12 12 4 2 4 4 14 14 10 5 14

Dear colleagues, I've been searching for information on the Kaiser-Meyer-Olkin (KMO) Measure of Sampling Adequacy (MSA). This statistic is generated in SPSS and is often used to determine if a dataset is "appropriate" for factor analysis -- it's true utility seems quite low, but it seems to come up in stats classes a lot. It did in mine, and a glance through the R-help

Hello! I have a problem checking the package. Firstly, I do not know how to specify the package to check. I tied specify it by supplying the path and by runing the R CMD check in the directory of the package. In addition to that, I get an error bellow. Any suggestions on how to set TMPDIR would be greatly appriciated! C:\Ales\Statistika\Blocno modeliranje\dr\blockmodeling>R CMD check *

Hi, The R-based version of R CMD build doesn't work for me on Windows: E:\biocbld\bbs-2.7-bioc>R\bin\R CMD build meat\Biobase * checking for file 'meat\Biobase/DESCRIPTION' ... OK * preparing 'Biobase': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes Warning in shell(sprintf("%s > %s

A command R CMD build <pkg> that fails, e.g., because of C code compilation errors, leaves a directory %TMPDIR%/Rinst.xxx containing the file R.css. Although R CMD INSTALL --build cleans up after itself, build does not. A fix is below. Also, build.in references Rcmd.exe, which I thought was no longer necessary? Index: build.in

Hello, I have setup a samba server at my office as a PDC it stores the profiles on the server fine. I can access the profiles from any computer in the office just fine. My problem is that I work from home 4 days a week and need to access my work profile. I currently VPN into the office network via freeswan. I can log into the the domain from the vpn'd connection and I can access the samba

Hello, I have the following problem with ssh on Solaris 10, 64bitx86 systems: bash-3.00# ssh -v admin at 172.20.11.244 OpenSSH_3.5p1, SSH protocols 1.5/2.0, OpenSSL 0x0090704f debug1: Rhosts Authentication disabled, originating port will not be trusted. debug1: ssh_connect: needpriv 0 debug1: Connecting to 172.20.11.244 [172.20.11.244] port 22. debug1: Connection established. debug1: identity

(Warning: There is some potential that this message is redundant.) I think that i have spotted an issue with R CMD check that does not trace back to a rare case, so it must have been reported already or i am doing something stupid. However, to be sure and because I did not find any comments on this while searching the R mailing lists, here is what i did: R CMD check . from within a package

I have some security alert log data that I'm parsing and doing some stats on. One of the fields is the "Classtype" which is the enumerated value of the type of alert found. classtypes = factor( alerts$Classtype ) fclass_types = table( classtypes ) fclass_types gives me a frequency table of the intrusion types: fclass_types classtypes

It appears that file.copy() does not protect against the case when one copies one directory to a subdirectory of itself resulting in it trying to create and endless recursive copy of itself. REPRODUCIBLE EXAMPLE: src <- "foo" dir.create(src); file.copy(src, src, recursive=FALSE) # ok file.copy(src, src, recursive=TRUE) # PROBLEM

I have a substantial CSV to import but can't seem to import even the simplest CSV. I'm running the latest stable REvolution R on OS X if that is pertinent. Here's the contents of a simple test2.csv CSV file: #,Status,Project 5842,New,Test > snortalerts = read.table( "/Users/lcox/Documents/test2.csv", header=TRUE, > sep=",", row.names="#") Error

Dear helpeRs, on my Windows 7 laptop, I have problems getting R CMD check to work. I believe it did work completely before, but I am not sure. Yesterday it almost worked, except for the tests: These were aborted because of a complaint that the temporary directory wasn't available. I played with windows environment variables for the temporary directory, but that didn't solve it.

Wondered about the best way to control for input variables that have a large number of levels in 'rpart' models. I understand the algorithm searches through all possible splits (2^(k-1) for k levels) and so variables with more levels are more prone to be good spliters... so I'm looking for ways to compensate and adjust for this complexity. For example, if two variables produce

Hello, Thanx in advance to anyone who can help me get this going. I have tinkered around and around with this and I have it functioning as a visible access point that I can connect to. My problem comes in when trying to access the internet. I''m not an iptables guru or anything but I got the following as my iptables startup to supposedly masq the connection correctly:

I've been trying to understand the as.Date functionality and I have a date and time stamp field that looks like this: "Tue Sep 15 09:22:09 -0600 2009" and I need to turn it into an R Date object for analysis. Simple date conversions I have down, no problem: > adate = c("7/30/1959") > as.Date(adate,"%m/%d/%Y") [1] "1959-07-30" > But when it

--- .gitignore | 6 +- .gitmodules | 3 - HACKING | 41 +++ Makefile.am | 6 +- README | 7 +- TODO | 61 +--- autobuild.sh | 65 ---- autogen.sh | 12 - configure.ac | 27

The $tmpdir environment variable is used by the eval and sh plugins to communicate the path to the temporary directory created by the plugin for shell scripts to use for temporary files. Previously we set this environment variable globally (in .load()), but this means the environment variable can be leaked into undesirable places, eg. into the --run script: $ nbdkit sh - --run 'echo