similar to: e1071 build issue

Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing

Hi Martyn, Thanks for your insight, that seems pretty direct. Unfortunately, I did not compile this version of R (it's on a large supercomputer system and this version of R was installed by the admins). Using "R CMD config", I see the following relevant settings: DYLIB_LD = icc -std=gnu99 DYLIB_LDFLAGS = -shared -openmp LDFLAGS = -L/opt/compilers/intel/cce/9.1.039/lib

On Tue, 2015-04-21 at 11:46 -0600, Andy Jacobson (NOAA Affiliate) wrote: > Hi, > > I'm encountering trouble compiling caTools_1.17.1.tar.gz and > e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. > 14 other packages I generally use installed without any trouble. I > notice both of these trouble packages have a C++ component, so I > wonder if that might

In R 1.9.0 running under Solaris 2.9 on a SunBlade 100, with "Sun WorkShop 6 update 2 C++ 5.3 2001/05/15" as the C++ compiler, I just did > install.packages("e1071") The output includes these lines, which I have wrapped to fit nicely in mail: ** libs cc -I/users/local/lib/R/include -I/usr/local/include -KPIC -xlibmil \ -dalign -xO4 -c cmeans.c -o cmeans.o cc

Full_Name: Uwe F. Mayer Version: 2.9.1 OS: SunOS myhost 5.10 Generic_120012-14 i86pc i386 i86pc Solaris Submission from: (NULL) (216.113.168.130) Configuration problem with the creation of shared libraries: Compilation only succeeds if SHLIB_LDFLAGS="-shared" is added to the configure command line. This is likely due to a wellknown gcc-4 feature, in that gcc requires -shared and not

A new version of e1071 has been released to CRAN which should be much easier to install on a lot of platforms because reading/writing PNM images has been moved to the pixmap package, hence there are no longer dependencies on external libraries and no configure mechanism. For the authors, Fritz Leisch ********************************************************** Changes in Version 1.2-0: o

Hello, I need a Fuzzy C Means algorithm. I found some documentation about cmeans {e1071} at http://rss.acs.unt.edu/Rdoc/library/e1071/html/cmeans.html Does someone knows where I can find it? Thank you Rui [[alternative HTML version deleted]]

Hi, I'm using e1071 package to do fuzzy cluster analysis. My dataset (ra) has 5237 observations and 2 variables - depth and velocity. I used fuzzy cmeans to create 6 fuzzy classes. >ra.flcust6<-cmeans(ra,6,iter.max=100,verbose=F,dist="euclidean",method="cmea ns",m=1.7,rate.par=NULL,weights=1) I would like to calculate the value of all the fuzzy validity

Hello, After reinstalling the whole OS and R as well, I tried to update.packages() and get the follwing error message: concerning the mgcv update: atlas2-base is installed and blas as well (on debian). I haven't found lf77blas, I assume it's a library or something similar associated with blas. any suggestion how to solve that, thanks Martin * Installing *source* package

Updating my 1.8.0 R installation (>update.packages() ) I obtain the following (SORRY FOR THE LENGTH OF THE LOG BUT IT HELPS!!!): ................ downloaded 135Kb KernSmooth : Version 2.22-11 in /usr/lib/R/library Version 2.22-12 on CRAN Update (y/N)? y mgcv : Version 0.9-3.1 in /usr/lib/R/library Version 0.9-6 on CRAN Update (y/N)? y trying URL

Hi all, I'm very new to R. I have installed R 1.9.0 on Linux (Fedora). Now I got an self-made package comprising R functions as well as C-Code which are used in several R functions. I installed the package without any error (see install log below). Then, I checked in /usr/lib/R/library if the package izbi exists and it exists. But whenever I try to load the library on the command line I

Hello, I am trying to install R packages under linux, some of the packages can not be installed and I got the following error, could anybody give me suggestion on where the problem is and how to fix it? Thanks-e > .libPaths() [1] "/usr/lib64/R/library" [2] "/usr/share/R/library" [3]

Dear All: I found a problem with the SVM internal cross-validation (CV) accuracy estimation in the e1071 package. File: Rsvm.c Line: 120 Today, it is: int j = rand()%(prob->l-i); Should be: int j = i + rand()%(prob->l-i); The erroneous code doesn't shuffle objects. Instead, it "randomly" moves objects from beginning to the end. In hope for a prompt response from the

Hi all, I've successfully compiled R-1.2 on a Linux box (Mandrake 7.1). However, when I installed packages from sources, I run into problems with the packages logspline and tseries. The error messages are as follows. Can anyone help? The compiler is gcc 2.95.3, if that helps. Andy ================================================ Installing source package `logspline' ... libs gcc

Hi, I installed SJava 0.66-1 on my linux RH 7.2 machine. I am using R-1.7.1. I set LD_LIBRARY_PATH up then called library(SJava) and it was fine. But when I called .JavaInit(), I got weird error that states it could not find java/lang/Hashtable. The session is below and shows my java configuration. I am using j2sdk1.4.2_01 from Sun. Thank you very much. Weiming Zhang > .javaConfig

Pues no lo sé. Es algo del código de RandomForest, supongo. Quoting Jesús Para Fernández <j.para.fernandez en hotmail.com>: > U es un dataframe? > > Obtener Outlook para Android<https://aka.ms/ghei36> > > ________________________________ > From: R-help-es <r-help-es-bounces en r-project.org> on behalf of > Manuel Mendoza <mmendoza en mncn.csic.es>

Hi I have problem running R (tried 1.8.0 and 1.7.1) under a fresh installed SuSE 9.0 using default settings: I'm not able to send plots to the monitor. Only postscript graphs are produced in external files. When assigning options(device='X11') and then plotting I get the message "Error in X11() : X11 is not available". Since this occured using the r-cran binary I tried

Tuve que dejar, de momento, lo del "loop con matriz que cambia de nombre" por algo más urgente, y me salió otro problema. Hago un cmeans con el paquete e1071; cl<-cmeans(Data,i,20,verbose=F,method="cmeans",m=2) y me da este error: Error in apply(u, 1, which.max) : dim(X) must have a positive length. Estoy harto de usar esa línea de código, con dfs iguales a la

I observed the same behavior as Edward this morning with R-1.2.2 on Red Hat Linux 7.0. There appears to be a problem with the library in netpbm-9.5-5, even after hunting down the missing shhopt.h that pbmplus.h is looking for. I worked around the problem by compiling e1071 without pbm support (moved pbm.c to pbm.c.bak). Matt Matthew R. Nelson, Ph.D. Director, Information Systems Esperion

I observed the same behavior as Edward this morning with R-1.2.2 on Red Hat Linux 7.0. There appears to be a problem with the library in netpbm-9.5-5, even after hunting down the missing shhopt.h that pbmplus.h is looking for. I worked around the problem by compiling e1071 without pbm support (moved pbm.c to pbm.c.bak). Matt Matthew R. Nelson, Ph.D. Director, Information Systems Esperion