similar to: e1071 build issue

Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing

Hi Martyn, Thanks for your insight, that seems pretty direct. Unfortunately, I did not compile this version of R (it's on a large supercomputer system and this version of R was installed by the admins). Using "R CMD config", I see the following relevant settings: DYLIB_LD = icc -std=gnu99 DYLIB_LDFLAGS = -shared -openmp LDFLAGS = -L/opt/compilers/intel/cce/9.1.039/lib

On Tue, 2015-04-21 at 11:46 -0600, Andy Jacobson (NOAA Affiliate) wrote: > Hi, > > I'm encountering trouble compiling caTools_1.17.1.tar.gz and > e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. > 14 other packages I generally use installed without any trouble. I > notice both of these trouble packages have a C++ component, so I > wonder if that might

In R 1.9.0 running under Solaris 2.9 on a SunBlade 100, with "Sun WorkShop 6 update 2 C++ 5.3 2001/05/15" as the C++ compiler, I just did > install.packages("e1071") The output includes these lines, which I have wrapped to fit nicely in mail: ** libs cc -I/users/local/lib/R/include -I/usr/local/include -KPIC -xlibmil \ -dalign -xO4 -c cmeans.c -o cmeans.o cc

Full_Name: Uwe F. Mayer Version: 2.9.1 OS: SunOS myhost 5.10 Generic_120012-14 i86pc i386 i86pc Solaris Submission from: (NULL) (216.113.168.130) Configuration problem with the creation of shared libraries: Compilation only succeeds if SHLIB_LDFLAGS="-shared" is added to the configure command line. This is likely due to a wellknown gcc-4 feature, in that gcc requires -shared and not

A new version of e1071 has been released to CRAN which should be much easier to install on a lot of platforms because reading/writing PNM images has been moved to the pixmap package, hence there are no longer dependencies on external libraries and no configure mechanism. For the authors, Fritz Leisch ********************************************************** Changes in Version 1.2-0: o

Hello, I need a Fuzzy C Means algorithm. I found some documentation about cmeans {e1071} at http://rss.acs.unt.edu/Rdoc/library/e1071/html/cmeans.html Does someone knows where I can find it? Thank you Rui [[alternative HTML version deleted]]

Hi, I'm using e1071 package to do fuzzy cluster analysis. My dataset (ra) has 5237 observations and 2 variables - depth and velocity. I used fuzzy cmeans to create 6 fuzzy classes. >ra.flcust6<-cmeans(ra,6,iter.max=100,verbose=F,dist="euclidean",method="cmea ns",m=1.7,rate.par=NULL,weights=1) I would like to calculate the value of all the fuzzy validity

Hello, I am trying to install R packages under linux, some of the packages can not be installed and I got the following error, could anybody give me suggestion on where the problem is and how to fix it? Thanks-e > .libPaths() [1] "/usr/lib64/R/library" [2] "/usr/share/R/library" [3]

Dear All: I found a problem with the SVM internal cross-validation (CV) accuracy estimation in the e1071 package. File: Rsvm.c Line: 120 Today, it is: int j = rand()%(prob->l-i); Should be: int j = i + rand()%(prob->l-i); The erroneous code doesn't shuffle objects. Instead, it "randomly" moves objects from beginning to the end. In hope for a prompt response from the

Pues no lo sé. Es algo del código de RandomForest, supongo. Quoting Jesús Para Fernández <j.para.fernandez en hotmail.com>: > U es un dataframe? > > Obtener Outlook para Android<https://aka.ms/ghei36> > > ________________________________ > From: R-help-es <r-help-es-bounces en r-project.org> on behalf of > Manuel Mendoza <mmendoza en mncn.csic.es>

Tuve que dejar, de momento, lo del "loop con matriz que cambia de nombre" por algo más urgente, y me salió otro problema. Hago un cmeans con el paquete e1071; cl<-cmeans(Data,i,20,verbose=F,method="cmeans",m=2) y me da este error: Error in apply(u, 1, which.max) : dim(X) must have a positive length. Estoy harto de usar esa línea de código, con dfs iguales a la

I observed the same behavior as Edward this morning with R-1.2.2 on Red Hat Linux 7.0. There appears to be a problem with the library in netpbm-9.5-5, even after hunting down the missing shhopt.h that pbmplus.h is looking for. I worked around the problem by compiling e1071 without pbm support (moved pbm.c to pbm.c.bak). Matt Matthew R. Nelson, Ph.D. Director, Information Systems Esperion

I observed the same behavior as Edward this morning with R-1.2.2 on Red Hat Linux 7.0. There appears to be a problem with the library in netpbm-9.5-5, even after hunting down the missing shhopt.h that pbmplus.h is looking for. I worked around the problem by compiling e1071 without pbm support (moved pbm.c to pbm.c.bak). Matt Matthew R. Nelson, Ph.D. Director, Information Systems Esperion

Hi everybody, i've been using rsync for quite some time to sync files between my laptop and my desktop for example i use the following to backup the music library (from Mac to Linux) > rsync -rvzu --exclude=.DS_Store --delete --exclude 'Podcasts/*' > $LOCAL_MUSI $REMOTE_MUSIC >> $LOGFILE An odd thing i always noticed is that some files were always copied, even

Dear All: I'm a newbie to R and chemometrics. Now I'm trying apply bclust on fuzzy c-means like this: >bc1 <- bclust(iris[,1:4], 3, base.centers=20,iter.base=100, base.method="cmeans") Committee Member: 1(1)(2)(3)(4)(5)(6)(7)(8)(9)(10)(11)(12)(13)(14)(15)(16)(17)(18)(19)(20)Erro r in bclust(iris[, 1:4], 3, base.centers = 20, iter.base = 100, base.method =

I have a print method for a set of statistical tests, vcdExtra::CMHtest, for which I'd like to have more sensible printing of pvalues, as in print.anova(). [Testing this requires the latest version of vcdExtra, from R-Forge **|install.packages("vcdExtra", repos="http://R-Forge.R-project.org")|** ] With my current print method, I get results like this, but all Prob values

Hi. I'm using WINE on a Mac through Darwine and it's help application and I'm having trouble getting the program to run. First of all, whenever I start it I get a "Missing shell DLL 'cshell.dll'", even though I downloaded one and put it into the .wine directory in my home folder. Any ideas? I've followed all the current AppDB suggestions up to now, but it still

Hello, I want to make a fuzzy classification from a dissimilarity matrix (calculated with daisy from package 'cluster'). I have tried to use fanny (package cluster) but I have the same problems than described in a previous message (http://tolstoy.newcastle.edu.au/R/help/05/05/4546.html) i.e. it always gives me two clusters in the results (even if k is different from 2) with the same

Updating my 1.8.0 R installation (>update.packages() ) I obtain the following (SORRY FOR THE LENGTH OF THE LOG BUT IT HELPS!!!): ................ downloaded 135Kb KernSmooth : Version 2.22-11 in /usr/lib/R/library Version 2.22-12 on CRAN Update (y/N)? y mgcv : Version 0.9-3.1 in /usr/lib/R/library Version 0.9-6 on CRAN Update (y/N)? y trying URL