similar to: change in behavior of <<-

this is not a problem with R but a request for related advice. i am trying to run a lengthy batch job from my home. the OS is ... Linux jedi.bwh.harvard.edu 2.4.22-openmosix1smp #1 SMP Fri Sep 5 01:05:37 CEST 2003 i686 athlon i386 GNU/Linux i start the job and put it in the background. while i am connected, all is well. eventually my ISP shuts down the connection if i do not do any input.

this is from a fresh svn checkout: [stvjc at stvjc1 R-devel]$ ls -tl Makefile -rw-rw-r-- 1 stvjc stvjc 12833 Jun 26 07:24 Makefile [stvjc at stvjc1 R-devel]$ svn up At revision 45988. [stvjc at stvjc1 R-devel]$ bin/R R version 2.8.0 Under development (unstable) (--) Copyright (C) The R Foundation for Statistical Computing ISBN 3-900051-07-0 .. > sessionInfo() R version 2.8.0 Under

i do not have access to the solaris machine on which this error is occuring, the info is coming to me via email. any advice on how to get R 1.6.1 built in the face of configure:12951: error: cannot compute sizeof (int), 77 would be appreciated. here are some snippets from the config.log $ ./configure ## --------- ## ## Platform. ## ## --------- ## hostname = opus uname -m = sun4u uname

How can R users take advantage of the "active PDF" paradigm for annotation of statistical graphics? The basic objective is to take a small number of locations on a graph and hyperlink them -- add persistent information to the pdf rendering of the graph so that when the user clicks on the location, a browser is (started if necessary and) pointed to a URL specified by the persistent

can list names attributes be preserved through S4 class containment? seems to be so but only if the containment relationship is direct ... see below. > setClass("c1", contains="list") [1] "c1" > l1 = list(a=1, b=2) > o1 = new("c1", l1) > names(o1) # pleasant surprise [1] "a" "b" > setClass("c2",

hi, I have 2 files example 1 and example 2 and would like to know what is in example2 and not in example1 (attached) V1 contain data which could be in duplicated which I am using as identifiers I used setdiff(example2$V1,example1$V1) to find the identifiers which are specific to example2: [1] "rs2276598" "rs17253672" I am looking for a way to get an output with all

Right. The methods such as as.data.frame.numeric don't get dispatched, basically because RSMethods tries to interpret class(x) in the S4 sense (so, e.g. a numeric vector has class "numeric"). Problems can then come from different semantics for S3-style and S4-style methods. The older methods don't dispatch on the mode of vectors (or equivalently, on the value of

Full_Name: Chris Paulse Version: 2.1.1 OS: WinXP Submission from: (NULL) (129.98.60.134) This seems strange. I have a small block of code that repeatedly calls rbinom. I put a break in there in case it returns NaN, as I've been having problems with this. Here is a transcript from the debug session: Browse[1]> theP [1] 1 Browse[1]> yleft[dataIndex] [1] 3 Browse[1]> rbinom(1,3,1)

If I run an analysis which generates statistical tests on many SNPs I would naturally want to get more details on the most significant SNPs. Directly from within R one can get the information by loading RSNPer (from Bioconductor) and simply issuing a command SNPinfo(2073285). Unfortunately, the command cannot handle a vector and therefore only wants to do one at a time. I tried the lapply and

Full_Name: Markus Jantti Version: 1.5.1 OS: GNU/Linux Unstable (Sid) Submission from: (NULL) (193.166.59.44) I was trying to get the package yags 3.20 by Vince Carey <stvjc@channing.harvard.edu> to run, but - after successfull installation -- loading the library failed with the message > library(yags) Error in stop(paste("Duplicated slot names: ", paste(slots[duplicated(slo

The name conflicts in Epi and ROC packages (2 'ROC' functions are the problem) cause the following code to work once, but not twice: library(MASS); data(cats); x = cats[,2] y = ifelse(cats[,1]=='F',0,1) library(Epi); ROC(x,y,grid=0)$AUC library(ROC); AUC(rocdemo.sca(y, x, dxrule.sca)) What is the standard way of resolving name conflicts? Ask maintainers to resolve

Hi all, In short: I'm running ddply on an admittedly (somehow) large data.frame (not that large). It runs fine until it finishes and gets to the "collating" part where all subsets of my data.frame have been summarized and they are being reassembled into the final summary data.frame (sorry, don't know the correct plyr terminology). During collation, my R workspace RAM usage goes

Hi, I am having problem with R misinterpreting (x,y) values in image(). I downloaded the followiing binary version of R: > version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 1 minor 3.0 year 2001 month 06 day 22 language R > q() [janef@cc-jainlabx1 Poster.tahoe]$ gcc -v Reading specs from

hi folks, i use ESS mode in emacs often to interact with R, and while i know how to save a session transcript, i'm wondering how to save just the history of the commands (i.e. identically to how R gives the history save option from its native CLI). if you use ESS with an R process, commands entered from a separate buffer and sent to the process do not get registered with the R history, and

The original message was received at Tue, 20 Jun 2006 15:27:22 +0200 from servmailp.cs.vhebron.es [172.17.50.65] (may be forged) ----- The following addresses had permanent fatal errors ----- <abacard@well.sf.ca.us> (reason: 511 5.1.1 User unknown) ----- Transcript of session follows ----- ... while talking to smtp.well.com.: >>> RCPT To:<abacard@well.sf.ca.us>

Hi all, I'm trying to install the OOP package (http://www.omegahat.org/OOP) but having difficulty in resolving the errors generated during compilation. Googling doesn't seem to be giving much help. Can anyone please help. Below is the transcript of what I get from my command prompt. (I'm running on rw_2.0.0 WIN XP SP2 platform). Thanks in advance ---transcript---- Microsoft

Hello, We have some strange problem which could be related to authentication here. All our user info is in an openldap directory. We normally use pam/getpwent in dovecot to access our user accounts, via nss_ldap/pam_ldap, but we tried to connect directly to the ldap server, with the very same results. We have one user (out of 100) which just cannot use dovecot with pop3. His

Thanks for reading, I need certain shell scripts to email me after they are done running. I've installed ssmtp to forward to my internal SMTP server. I have a working ssmtp config on a Gentoo system that works just fine, but on CentOS it's not working. Here's a bounce message: Date: Thu, 13 Jul 2006 13:33:22 -0700 From: Mail Delivery Subsystem <MAILER-DAEMON at

The following transcript should provide all the necessary details: # yum install glibc-devel-2.17-157.el7.i686 Loaded plugins: fastestmirror, langpacks Loading mirror speeds from cached hostfile * base: mirrors.gigenet.com * epel: mirrors.xmission.com * extras: mirrors.gigenet.com * updates: ftp.osuosl.org Resolving Dependencies --> Running transaction check ---> Package

R-2.9.0/include/R_ext/Arith.h has: int R_IsNA(double); /* True for R's NA only */ int R_IsNaN(double); /* True for special NaN, *not* for NA */ int R_finite(double); /* True if none of NA, NaN, +/-Inf */ #define ISNA(x) R_IsNA(x) /* True for *both* NA and NaN. The first and last lines are contradictory - if R_IsNA is true only for NA, not NaN, then ISNA should be the same.