similar to: cluster installation hangs or too many args (PR#1623)

Full_Name: Felix Hernandez-Campos Version: R-1.5.0 OS: IRIX, FreeBSD, Solaris Submission from: (NULL) (208.30.174.32) [R-1.5.0] The installation of the package cluster fails in FreeBSD (4.2) and IRIX (6.5) (but it works fine for Solaris). In FreeBSD, the installation hangs right after f77 -fPIC -g -O2 -c clara.f -o clara.o (the first FORTRAN compile). In IRIX, the program also hangs at

I'm trying to compile R-beta on IRIX using the native MipsPro 7.4 compilers, without great satisfaction. A list of problems is given below, and any advice on solving them is appreciated. Martyn Configuration: ------------- Here are the configuration options I am using ./configure CC=cc CXX=CC F77=f77 CPPFLAGS="-I/usr/freeware/include" LDFLAGS="-L/usr/freeware/lib32"

Full_Name: Tim Middelkoop Version: 0.64.0 OS: IRIX 6.3 on O2 Submission from: (NULL) (128.119.88.192) Various IRIX complile issues src/nmath/pnt.c IRIX cc does not like double negatives Makeconf,config.site,etc/Makeconf f77 pic hack, should change Makeconf.in or other... change -PIC with -KPIC enjoy, tim... === diff -ru orig/R-0.64.0/src/nmath/pnt.c R-0.64.0/src/nmath/pnt.c ---

Hi (and Merry Christmas), I am trying to compile R on an AIX IBM machine using the native C and FORTRAN compilers... and everything goes smoothly (congratulations for the configure and make files, this is very nice)... until the pacakge 'cluster' (see dump below).... Any hint ? Laurent 1501-510 Compilation successful for file pam.f. cc -I/data1/laurent/R-1.6.1/include

Dear R experts: I am running some calculations using polr() in MASS library, and found some differences in results obtained on two different machines (IRIX 6.5, and Linux RH 7.1). It is not clear to me whether this is due to some error in my programming the calculation and how to resolve the differences, if possible. The polr() call is the following:

Dear R-devel, Has anyone seen this problem? We tried building R-1.8.1 (and R-1.9.0 alpha 2004-03-17) on an Irix 6.5 box using ./configure CC="cc -64" F77="f77 -64" --with-tcltk=no --enable-R-shlib make check failed because NA + 0 gave NaN instead of NA. I've tried both 32- and 64-bit build, with and without --enable-R-shlib. The same symptom occur in all cases. Any

I'm trying to install version 0.63.2 on an SGI Origin 200 with plenty of memory, running Irix 6.5. I previously installed 0.63.0 on this same system without incident. I'm getting the following error when I run ./configure: creating cache ./config.cache checking for a BSD compatible install... /usr/local/bin/ginstall -c checking whether ln -s works... yes checking for ranlib... ranlib

Hi, I'm working with a fairly massive data set and I need to allocate memory beyond the 2GB limit. I'm using R 1.5.0 on a SunOS 5.8 machine (16 GB RAM). Has anyone been succesful at patching the code to get rid of the 2GB memory limit? (there are quite a few places in which vsize is an int or tested against INT_MAX). I'll appreciate any guidance you can provide. Thanks. Regards,

On IBM RS/6000 AIX 4.2, I built R-1.2.1 with % env CC=xlc CXX=xlC F77=f77 FC=f77 ./configure R is now configured for powerpc-ibm-aix4.2.1.0 Source directory: . Installation directory: /usr/local C compiler: c89 -g C++ compiler: xlC -g FORTRAN compiler: f77 -g X11 support: yes Gnome support: no Tcl/Tk

Greetings, I have had good success using the clara() function to perform a simple cluster analysis on a large dataset (1 million+ records with 9 variables). Since the clara function is a wrapper to pam(), which will accept known medoid data - I am wondering if this too is possible with clara() ... The documentation does not suggest that this is possible. Essentially I am trying to

Hello Laurent, Ray and Greg, I tried the gmake settings. Yet, I still got an Error code 1 message when I run the test. running regression tests don't know how to make ../library/base/R/base (bu42). *** Error code 1 (bu21) Thanks you if you have any idea. Manuel -----Message d'origine----- De : Laurent Gautier [ mailto:laurent at genome.cbs.dtu.dk <mailto:laurent at

Hi, i want a cluster-analysis with clara, but getting an error because in cldat are NA's. Error in clara(cldat[, 1:3], 4) : Each of the random samples contains objects between which no distance can be computed. cldatx <- subset(cldat,select=c(A,B,C)) cldaty <- na.omit(cldatx) Now , clara works but cldat has ~193.000 obs and cldatx without NA's ~75.000 obs. How could i match

On my IRIX system (SGI compilers, gcc not installed) ./configure runs fine, but there is a problem with make (output below) that can be solved by changing one line in src/modules/lapack/Makefile. If this line is changed, make runs without problems. 'make check' still has a problem (sh[14]: /usr/sbin/perl: arg list too long), but I assume this is "cosmetic". Manfred -----------

Anyone know what the problem is with IRIX 6.5 ? (esp if there is a solution?). Looks like the built-in math stuff is masking definitions from R source. (passing this along for a friend). best, -tony From: Andreas Krause <Andreas.Krause@genedata.com> To: "A.J. Rossini" <rossini@biostat.washington.edu> Subject: Re: splus shell escapes # download ./configure R is now

Dear all, I want to install R-0.65.0 on mips-sgi-irix6.5 (SGI IRIX 6.5 IP32), but it doesn't work !!! I run the following configure call: <146>: ./configure --prefix=/usr/people40c/kuonen/Software/bin ... R is now configured for mips-sgi-irix6.5 Source directory: . Installation directory: /usr/people40c/kuonen/Software/bin C compiler: gcc -g -O2

The original report was that compiling with gcc2.95.2 gcc and the related g77 on Irix 6.,5.13 produced an R which wailed its tests with: >> On entry to DGEMM parameter number 1 had an illegal value To some extend this confused me, as the source only seems to mention DGEMM in lowercase. Eventually, after the debug code I added did nothing, I realized that the R which was build was not

Hi All, For the function "bclust"(e1071), the argument "base.method" is explained as "must be the name of a partitioning cluster function returning a list with the same components as the return value of 'kmeans'. In my understanding, there are three partitioning cluster functions in R, which are "clara, pam, fanny". Then I check each of them to

I've written an Ogg Vorbis (only !) player, which some may like to play with. It works for me (tm) and I like it. If you don't, well, you know what you can do with it ;) I leave it running 24/7 and it plays my music without problems and without annoying me. That's all it's for, really. You can get it from http://www.geoid.clara.net/rik/arch/squelch.tar.gz The README follows ...

Dear R helpers, I have a large data set with 36 variables and about 50.000 cases. The variabels represent labour market status during 36 months, there are 8 different variable values (e.g. Full-time Employment, Student,...) Only cases with at least one change in labour market status is included in the data set. To analyse sub sets of the data, I have used daisy in the cluster-package to create

Dear R-help, I've managed to crash R on Irix when I called a Fortran subroutine that calls R's random number generator, as described in Section 5.6 of the R-exts manual. (It does say in that section that this is not guaranteed to be portable...) (Well, R doesn't crash when calling the RNG. It crashed when the random number generated isn't inside the unit interval.) Can anyone