similar to: Error in gzfile(file, mode) when checking a package with rcmd check

Dear Listers, I got this message when compiling a package: * creating pgirmess-manual.tex ... OK * checking pgirmess-manual.text ... ERROR LaTex errors when creating DVI version. This typically indicates Rd problems. The message is quite explicit but I struggled a lot before understanding that the trouble comes from a single file "selMod.rd" among 44 topics. Even though I have

Dear all and Mikis I have the opportunity to compare fits with the 'classical' glm and gamlss and no smoother of any kind just the same model formula (both with the binomial family). I get exactly the same coefficients but very different residuals, gamlss giving residuals which are extremely close to 'normal' and glm very far... How can this be ? Thanks in advance for

Working under Windows XP, I am compiling a package called 'pgirmess' with the command rcmd build --binary --auto-zip pgirmess I have this message error after having listed: functions text html latex example chm .... zipping help file hcc: not found cp: cannot stat 'c:/TEMP/Rbuild365620874/pgirmess/chm/pgirmess.chm': No such file or directory make[1]: *** [chm-pgirmess] Error 1

hi there, after bumping into a problem for installing pgirmess package in linux mint 14, i figured out this solution that seemed to work fine ----------------------- * in synaptic or similar software : installation of proj dev lib & dependances # to sort out problems of rgdal installation of libgdal1 dev lib & dependances # to sort out problems of rgdal * in R installation of rgdal &

Hi there, I am doing multiple comparisons for data that is not normally distributed. For this purpose I tried both functions kruskal{agricolae} and kruskalmc{pgirmess}. It confuses me that these functions do not yield the same results although they are doing the same thing, don't they? Can anyone tell my why this happens and which function I can trust? kruskalmc() tells me that there are no

Dear Lister, I work with R 2.0.1 and Windows XP, and meet a strange trouble trying to make a R package with a make-package.bat file John Fox has kindly provided (see detailed script below). I am working with it since some months with excellent results (I do'nt use compiled C code so far). Just adding a new function in the R directory today, when running make-package and thus excuting

Hi, I would like to find out if the kruskalmc command in the pgirmess package controls for the family-wise type-I error rate. Thank you Dr. Iasonas Lamprianou Assistant Professor (Educational Research and Evaluation) Department of Education Sciences European University-Cyprus P.O. Box 22006 1516 Nicosia Cyprus Tel.: +357-22-713178 Fax: +357-22-590539 Honorary Research Fellow Department of

Hi, I am routinely compiling a package and since I have moved to R 2.10.0, it troncates some section texts in the doc: With the following section in the rd file: \details{ The function calls gpsbabel via the system. The gpsbabel program must be present and on the user's PATH for the function to work see <http://www.gpsbabel.org/>. The function has been tested on the following

Dear all, I did a Kruskall-Wallis test for a comparison of a variable of interest between 10 sites and I get a significant result (p=0.0019). however, when I perform a post-hoc test using kruskalmc from the pgirmess package, I get no difference between any of the paired comparisons. I cannot find anything in the internet, not in my stats books about how to explain this contradictory result. I

I am developping a package (pgirmess) that since long does not go through CRAN MacOSX checks, just because I have this command in one of the examples. text(mydata[,3],mydata[,4],paste(round(dirs,0),"?"),cex=0.7) It makes: <ERROR: re-encoding failure from encoding 'latin1'> text(mydata[,3],mydata[,4],paste(round(dirs,0),"+ + + + cleanEx() +

Dear listers, I am tryin to install a package in a student training room. Unsuccessfull! With this message: > install.packages("pgirmess") trying URL `http://cran.r-project.org/src/contrib/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 77400 bytes opened URL ================================================== downloaded 75Kb trying URL

Dear R-help, I have been trying to use the TukeyHSDs function in the "pgirmess" package to quickly extract all significant pairwise comparisons in an aov object. However, it seems that this function isn't working as intended when only the two last populations means being tested are significant. An example of this can be seen below: >numbers<-c(464,482,453,434,495,487)

Dear listers, I was used to package pgirmess under Windows with everything OK, but, for the first time, I had a trial this afternoon on Ubuntu 7.10 gutsy (I have a double boot computer and work more and more under unix) and R 2.7.0. Everything went OK except this: sudo R CMD check pgirmess ..... * checking examples ... ERROR Running examples in 'pgirmess-Ex.R' failed. The error most

Dear listers, Here we have a strange result we can hardly cope with. We want to compare a null mixed model with a mixed model with one independent variable. > lmmedt1<-lme(mediane~1, random=~1|site, na.action=na.omit, data=bdd2) > lmmedt9<-lme(mediane~log(0.0001+transat), random=~1|site, na.action=na.omit, data=bdd2) Using the Akaike Criterion and selMod of the package pgirmess

Dear list! I work with multiple Kruskal-Wallis test (kruskalmc, package pgirmess), which evaluates differences in medians among groups (5 groups). A result of a test is significant differences among some groups, while median values are the same for 4 groups (using tapply). Why? p.s.: number of samples in groups vary from 50 to 4900. Thanks to all, OV .

Hi All Please see the Rprofile file which i have modified as follows and after that when I start R then I see that R says to me "TRUE" for all the packages implying that all loaded at once. But when i try to use commands as simple as help("lm"), it doesnt work nor any of the menu "Packages" is not working. Although the regression using lm ( Y ~ X ) is working

CRAN (and crantastic) updates this week New packages ------------ * apcluster (1.0.1) Ulrich Bodenhofer http://crantastic.org/packages/apcluster The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are analogous to the Matlab code published by Frey and Dueck. * BioPhysConnectoR (1.6-1) Franziska Hoffgaard

CRAN (and crantastic) updates this week New packages ------------ * allan (1.0) Alan Lee http://crantastic.org/packages/allan Automates Large Linear Analysis Model Fitting * andrews (1.0) Jaroslav Myslivec http://crantastic.org/packages/andrews Andrews curves for visualization of multidimensional data * anesrake (0.3) Josh Pasek http://crantastic.org/packages/anesrake This

Dear R-helpers, We marked 6000 leaves from 5 SPECIES - 10 individuals/species - in two different TREATMENTs: a control and a dry-plot from which 50% of incoming precipitation was excluded. We followed those leaves for 42 months and noted the presence and absence at each visit. I then carried out a Cox Harzard model to see differences in leaf mortality between parcels and among species over time: