similar to: R CMD INSTALL writes to stderr

I've been updating a package and, when installing a local devel version, I get an error "object 'confusionMatrix' not found whilst loading namespace". Looking around online, it appears that this might be related to loading a specific RData file, but it doesn't seem to be the case AFAICT. I've installed the devel version in the last week without issues and the

On an (Intel Leopard) Mac I try to build a package (mxFinance) which depends on another package (mxGraphics). The dependendy is 1) a 'Depends:' in DESCRIPTION and 2) an import in NAMESPACE. - The build fails if the dependent package (mxGraphics) is not installed in the R.framework Do I need to have installed all packages which are required by packages to be built binary (source builds

Dear list, I'm trying to suppress/redirect/squash the output from commands like install.packages, or download.file. The problem is that none of: sink(..., type="message"), sink(..., type="output"), capture.output, suppressMessages are quite doing the trick. Output gets written to the stderr stream, despite any combination of the above suppression commands. According to

Hi. I am writing some code in C that I would like to link into R. My Makevars file is: PKG_CPPFLAGS=-I/usr/local/include PKG_LIBS=-L/usr/local/lib -lgsl PKG_CFLAGS = -Wall -O0 -g -p -pg The source file is core.c,. and I am compiling using R CMD SHLIB core.c The output is gcc -arch x86_64 -O3 -g -p -std=gnu99 -I/Library/Frameworks/ R.framework/Resources/include

(1) ...need to speed up a monte-carlo sampling...any suggestions about how I can get R to use all 8 cores of a mac pro would be most useful and very appreciated... (2) spent the last few hours trying to get pnmath to compile under os- x 10.5.4... using gcc version 4.2.1 (Apple Inc. build 5553) as downloaded from CRAN, xcode 3.0... ...xcode 3.1 installed over top of above after

I am developing a package for analysis of seismic data that relies on a Fortran library. Package compilation works fine on Ubuntu and Red Hat Enterprise but fails for R 2.15.3 on Mac OSX 10.8.4. I've included the entire dump below but the relevant error message seems to be: ld: warning: ignoring file libmseed/libmseed.a, file was built for archive > which is not the architecture being

Hello. I wrote a package (that contains C source) that I've been compiling and running on both Linux and Windows for about a year. However, that same source package fails to compile on MacOS (10.4.11, PowerPC G4, Xcode installed, gcc version 4.0.1, make version 3.80, ld version cctools-590.23.2.obj~17). There is nothing platform-specific in the code-- just numerical functions that I

Dear all, I'm trying to compile FORTRAN code to be used in R, failing miserably. I got a simple code function to try to figure out what is going wrong. Here is the code (available on the web) : subroutine bar(n, x) integer n double precision x(n) integer i do 100 i = 1, n x(i) = x(i) ** 2 100 continue end 1. I compiled the

Hi, I'm trying to install rimage on a Mac OS X 10.4 machine. I followed the advice in previous R-help threads and got over the hurdles of having the header files in the right places, among other things. But I can't figure out what to do with this error. ice.pnl.gov:/home/waichler<949>system_profiler -detailLevel mini SPSoftwareDataType Software: System Software Overview:

I recently bought a new Intel Mac with OSX Leopard. I reinstalled the latest version of R and the Xcode tools. I'm trying to compile a C source code with the R compiler in X11, and I receive the following error message: [Macintosh:School Work 07-08/36-711/HW 3] dajmcdon% R CMD SHLIB McDonaldHW3.c gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp

I recently bought a new Intel Mac with OSX Leopard. I reinstalled the latest version of R and the Xcode tools. I'm trying to compile a C source code with the R compiler in X11, and I receive the following error message: [Macintosh:School Work 07-08/36-711/HW 3] dajmcdon% R CMD SHLIB McDonaldHW3.c gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp

Hello, I'm working with R, I try to call C from R. When I try to compile my file.c to make file.so, with the command : R CMD SHLIB foo.c return the message : gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined

I've been trying to get R+PostgreSQL+PL/R to work together on a OSX machine without the Framework and CoreFoundation options and have noticed some suspicious switches when compiling packages. I've installed R (on OSX) with the following ./configure: ./configure \ CC="gcc -arch i386" \ CXX="g++ -arch i386" \ OBJC="gcc -arch i386" \

Hello, I am trying to compile some F77 subroutines as shared objects for R on my Mac. --> Mac OS-X Version 10.4.11 (Tiger Intel Mac) I have done this (successfully) before on Sun Solaris and Linux Fedora systems using the following command. > R CMD SHLIB myfile.f I have g77 installed from this page. http://hpc.sourceforge.net/ I am using R 2.8.1, and I have installed all 4 additional

Hi, Wasn't able to see a bug report on this issue yet... Hope I'm not doublng up. There seems to be little info around for what "R CMD javareconf" does but it has some deprecation errors seemingly. On running cmd in terminal: Java interpreter : /usr/bin/java Java version : 9 Java home path : /Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home Java compiler :

Dear R gurus, I attempt to install the latest version of R from source on my MacBook Pro, using latest versions of Xcode and gfortran for Lion and configure options: ./configure --with-libintl-prefix=/sw --enable-R-shlib (this last option necessary to further install the Rpy Python package) I got the following unreduced compilation error: gcc -std=gnu99 -dynamiclib

Dear list, I'm hoping the R guru's can help with an error i've been getting for at least a year during active package development. I have a package loaded & spot a documentation bug, so I: edit the Rd file (or in the roxygen header + roxygenize); then R CMD BUILD, R CMD INSTALL then in the same R session, reload the library & lookup a man page, I always get this error: Error

Hi all, I have a problem but i am not sure that this is the right mailing list. I'm writing a R program which call a C++ program, through the function .Call. I use to compile the c++ script with the command R CMD SHLIB SpTempWrapC.cpp -Wall -l covmodel.h -l util.h Everything works fine since, for mistake, i paste in the terminal the content of the r-script. Now, when i try to compile,

Hello, I need to plot multiple confidence intervals for the same model parameter e.g. so for the same value of the parameter in point x_1 I would like to see four different confidence intervals so that I can compare the accuracy e.g. boot basic vs normal vs my own vs classic lm CI etc. I like very very much the plotCI implemented here: http://cran.r-project.org/web/packages/plotrix/index.html

Hi all, I am attempting to install a package called phylobase from source directory. It all seems to work until the end, at which point it looks like the last compile command fails because the line is too long...perhaps because the g++ command line also includes "Loading ~/.Rprofile...", like this: ============================ g++ -arch i386 -dynamiclib