similar to: Using zip format for help pages, examples, etc.

Hello, I am trying to install SJava but I haven't been able to complete it successfully. I have tried to install it from bioconductor using the followin code and got the following output: > source("http://www.bioconductor.org/biocLite.R") BioC_mirror = http://bioconductor.org Change using chooseBioCmirror(). > biocLite("SJava") Using R version 2.12.2, biocinstall

Hi there. I am trying to install SJava on my windows xp machine. I downloaded the windows source file SJava_0.69-0.tar.gz from the web site http://www.omegahat.org/RSJava/ I have folloed the XP command line instructions as directed in the table underneath the download link: cd $RHOME/src/library unzip SJava_0.69-0.zip cd SJava ./configure.win $RHOME cd $RHOME/src/gnuwin32 make pkg-SJava I

I am trying to download and install Omegahat Sjava (http://www.omegahat.org/RSJava) to be able to call R from within Java. The install instructions are as follows: cd $RHOME/src/library unzip SJava_0.69-0.zip cd SJava ./configure.win $RHOME cd $RHOME/src/gnuwin32 make pkg-SJava However, my command prompt won't recognize "unzip","./configure.win", or

Hello, happy new year to all. The new Year gave me a new computer with Win98 and promptly I installed R on it. I created a directory R, with subdirectories gcc, perl,bin, helpwrk and rw1040. I got rw1040 from BDR place, the rest were gotter from the internet in the last week of the year, i.e. they are the newest versions. I modified autoexec.bat to put gcc\bin, perl\bin, etc in the path. I put the

Hello, I encountered some unexpected behavior of unzip when using info-zip's unzip instead of R's internal program. Specifically, unzip("file.zip", list=TRUE, unzip=/usr/bin/unzip) produces incorrect output if the zip archive has filenames with spaces, and results in an error if the zip archive includes an archive comment or file comments. Here is some code to reproduce along

4. Noticed this error go by in the r-devel build in Windows 95: F:/R/TOOLS/BIN/MAKE.EXE -C ./help RHOME=F:/R/R-devel PKGDIR=F:/R/R-devel/src/lib rary RLIB=F:/R/R-devel/library ziponlyhelp-base MAKE.EXE[2]: Entering directory `F:/R/R-devel/src/gnuwin32/help' zip -jqmX help/Rhelp help/* -x help/AnIndex 2> nul MAKE.EXE[3]: [zipup] Error 12 (ignored) My guess is that it's a problem with

Folks, Having problems getting started with SJava and request help. I get this error when running .JavaInit() (within RGui 1.5.1, on Windows 2000): Error in .JavaInit() : Couldn't start Java Virtual Machine: Cannot find the Omegahat interface manager class. Check you classpath! (Before you right back saying read the emails, please read further - in short, been there, done that)

I have a zip file. It is over 2Gb in size: -rw-r--r-- 1 sweh sweh 2383956582 Mar 13 13:44 test.zip The standard "unzip" program barfs: % unzip -l test.zip Archive: test.zip End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment

I'm excited about SJava, and I'ld love to get it working, but can't get past loading the package. .First.lib fails on this statement: > library.dynam("SJava", "SJava", "C:/PROGRA~1/R/rw1091/library") Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

Dear R-developers, I am trying to reproduce the autoconf.ac example from R-ext and fail. My autoconf file looks like this [autoconf.ac] # original by Friedrich Leisch, much changed by BDR AC_INIT([SBMLodeSolveR]) dnl Select an optional include path, from a configure option dnl or from an environment variable. AC_ARG_WITH([sbmlode-include],

I have R 1.9.0 running under Solaris 2.9 ona SunBlade 100, and am very happy with it. I heard about the stuff at www.rmetrics.org and thought it might be worth looking at. However, what I found there is a bunch of .zip files. The entry page suggests that there is some way to install packages from .zip files in R, but I have searched all the documentation I have and cannot find it. _Is_ there

Dear list, I needed to extract a zip-archive, and found zip.file.extract in utils. My only problem was the use of tempdir(), since I wanted to permanently extract the archive at a fixed location for later use. My own fix was simple, adding an extra parameter zipdir (without default), and within the function change tmpd <- tempdir() to tmpd = ifelse(missing(zipdir),tempdir(),zipdir) This

Hello everyone, Can anyone give me some hint/suggestion for unzipping a file in R? The help file for "zip.file.extract" function seems to be difficult to understand. For example, the name of my zip file is "refGene.txt.gz", which is located in "C:\Documents and Settings\Desktop\test1". I would like to unzip this file to the same directory. Here's

..many thanks, no it works until he didn't find hhc.exe (..but the path to HTMLHelpWorkshop should be correct !?) and break down, ok i just check all path settings and find a solution for my self ! But here another problem: ...modify without the MkRules in my current binary R.1.6.1\src\gnuwin32 C:\DataMining\rw1061\library>Rcmd INSTALL Oop make: Entering directory

I'm trying to build the 1.4.0 development version of R for Windows. I'll be posting problems as they arise, until I give up (or succeed), or someone asks me to stop. 1. I don't have zlib, the compression library. The source file gnuwin32/unzip/WHERE says to get it from ftp://ftp.info-zip.org/pub/infozip/zlib/zlib.html; that web site says it has been closed and redirects me to

This patch (apologies for the size) updates zlib/* to the files that ship with zlib 1.1.3. Index: zlib/ChangeLog =================================================================== RCS file: /cvsroot/rsync/zlib/ChangeLog,v retrieving revision 1.1 diff -u -r1.1 ChangeLog --- zlib/ChangeLog 7 May 1998 06:19:41 -0000 1.1 +++ zlib/ChangeLog 30 Jan 2002 01:12:41 -0000 @@ -1,6 +1,54 @@ ChangeLog

Dear R users, My situation: (1) I have limited workspace for my work harddisk (about 10 GiB). (2) I have a lot of data files in R workspace (*.RData) which most of them > 200 MiB. For some reason I zip some of them, for instance "filename.RData (250 MiB)" to "filename.zip (3MiB)". In this work I have a lot of more space of my harddisk. Normally, If I want to use

Full_Name: Venkatesh Mysore Version: R-1.7.0 OS: WindowsXP Submission from: (NULL) (216.165.110.10) While accessing Rproxy.dll repeatedly (using the code from the (D)COM example in the R website) causes a failure in the 24th iteration. R-1.6.2 does NOT give this error. This seems to be a memory management error, that might be linked to the huge leakage difference between R-1.7.0 and R-1.6.2

Can one write a zip file from R? I want to create a file with a name like "dat.zip", being a zip file containing "dat.csv". I can create "dat.csv", then call "system('zip -r9 dat.zip dat.csv')". Is there a better way? I can use "gzfile" to write a gz file, but I don't know how to give that a structure that would

"R Installation and Administration", section 2.5 "Sub-architectures" describes calling specific builds of R using the call "R --arch=name". I am trying to build and install three versions of R-2.9.1, each configured with a different valgrind-instrumentation level ("Writing R Extensions", section 4.3.2 "Using valgrind"). My goal is to be able to