similar to: 62.1 make problems

Installing 0.61 in Solaris (SunOS 5.5) I am getting the following error when I try to make docs or make help [28] /home/res8/gilp/R : make docs make: Fatal error: Don't know how to make target `../src/library/*/man/*.Rd' Current working directory /home/res8/gilp/R-versions/R-0.61/etc Paul Gilbert -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel

I'm having trouble with make at the documentation. (R 0.63.2 on Solaris) Paul Gilbert ______ g77 -O2 -fPIC -c kmns.f -o kmns.o ld -G -o mva.so dblcen.o hclust.o kmns.o mkdir ../../../../library/mva/libs mkdir ../../../library/stepfun mkdir ../../../library/stepfun/R Building system startup profile You should `make docs' now ... make: Fatal error: Don't know how to make target

I've loaded R-0.50-a1 but when I try to apply the patches it cannot find the files to apply patches to. [9] gilp/R0.50 : patch <R-0.50-a1.patch1 Looks like a new-style context diff. File to patch: [10] gilp/R0.50 : [10] gilp/R0.50 : [10] gilp/R0.50 : cd R-0.50-a1 [11] gilp/R0.50/R-0.50-a1 : ls CHANGES RESOURCES configure.mac* COPYING TASKS configure.win* COPYRIGHTS TASKS.OLD

I'm trying to set up R INSTALL for my padi package and the compile needs -I pkg/src-c to find some .h files. (Perhaps I should be putting these in a different location?) Could someone please explain how I should pass this location to the compiler used by R INSTALL from the Makefile in my pkg/src? Thanks Paul Gilbert

This example from the INSTALL help seems to be broken in R 0.90.1 (on Solaris): gilp/dse : R CMD check --help Usage: R CMD check [options] [-l lib] pkg_1 ... pkg_n I'm trying to figure out how to request more nsize and vsize when using R CMD check. Paul Gilbert -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read

I shouldn't try to do this on Monday morning. Can anyone suggest why the make for R 0.63 is failing for me under Solaris (SunOS 5.6). Paul Gilbert ... creating src/scripts/html2dos creating tests/Makefile creating tests/Examples/Makefile creating src/include/Platform.h R is now configured for sparc-sun-solaris2.6 Source directory: . Installation directory: /usr/local C

There seems to be a minor problem in .First.lib: the library argument is all of $RLIBS. I think it should be just the one directory from which the package is being taken. Paul Gilbert -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

> R code works but the shared objects built from fortran code do not find > the appropriate libs with functions like __pow_ii or __epx at runtime. I used to have endless trouble with __pow_ii which as I recall could be be fixed by the correct incantation of the mix of compiler libraries and LD_LIBRARY_PATH. It seemed to be extremely sensitive and never easy to get right. The problem is

I am having trouble installing cluster from R-1.5.0-recommended : R CMD INSTALL *.tar.gz ... g77 -fPIC -g -O2 -c pam.f -o pam.o g77 -fPIC -g -O2 -c spannel.f -o spannel.o g77 -fPIC -g -O2 -c twins.f -o twins.o cp: cannot access *.so ERROR: compilation failed for package 'cluster' [34] /home/com1/gilp/Rlibs/R-1.5.0-recommended : This is with R-1.5.0 on Solaris 5.8 using gcc

I've just got a new workstation with Solaris 5.6 and seem to be having some R 0.61.1 installation problems that did not occur in 5.5. If anyone can see the problem I would appreciate suggestions. Following is output from make at the point of failure. TIA Paul Gilbert ... gcc -g -I../include -c relop.c gcc -g -I../include -c saveload.c In file included from

I'm get the following anti social behavior from R 0.62.1 Paul _____ R : Copyright 1998, The R Development Core Team Version 0.62.1 (June 15, 1998) ... > rbind(NULL, matrix("a", 5,3)) Arithmetic Exception - core dumped $ $ -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html

>>>>> Paul Gilbert writes: > I have been trying to set up my time series library with the new > library mechanism. It is a fairly large amount of code and previously > I split it into five pieces in order to load it into R. (Has anything > changed which might suggest I shouldn't need to do this anymore?) The > five files are called dse1, dse2, dsex1, dsex2, and

I have now tested R 1.3.1 compiled with GCC 3.0.2 on Solaris and the example I previously posted (repeated below) still gives a segmentation fault, as it does with GCC 3.0.1 but not with 2.95.2. The eigen calculation sometimes needs to be repeated several times before the segmentation fault occurs. La.eigen does not cause a problem. (The problem occurred with R-devel too, but I have not tested

Recent sensible changes to the dynload mechanism have made an old problem resurface: how should we deal with packages which contain Fortran code and may need to be linked against additional libraries such as -lf2c? The current consensus is that extra Fortran libraries maybe needed are handled via the make variable FLIBS, and that `-lf2c' or `-lg2c' are added by default if g77 is used.

I installed R-2.3.1 and ran make check without problem, but I am having trouble installing several packages using gcc (GCC) 3.2.3 20030502 (Red Hat Linux 3.2.3-53) on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) Kernel 2.4.21-40.ELsmp on an x86_64 Below are the messages from MCMCpack. Perhaps my systems are messed up? Paul Gilbert > install.packages("MCMCpack")

I compiled and ran R 0.62.1 without any serious problem on SunOS 5.5.1 and it also ran on SunOS 5.6. To compile on SunOS 5.6 I had to get a new version of gcc and g77 . Having done that I can now compile with no errors on SunOS 5.6, but when I try to run R there are serious problems: R : Copyright 1998, The R Development Core Team Version 0.62.1 (June 15, 1998) R is free software and comes with

I've been trying to build a bundle with the R-devel snapshot from yesterday. (Yes I know it is unstable and just tell me if I shouldn't be trying to do this yet.) It is failing with the message tar : /dev/rmt/0 : Permission denied It happens after "removing junk files" and just after the message "building dse_2000.9-1.tar.gz" It looks to be coming from the line in

I'm having trouble making todays development snapshot: -DHAVE_CONFIG_H -g -O2 -c stirlerr.c -o stirlerr.o stirlerr.c:34: conflicting types for `Rf_stirlerr' ../../src/include/R_ext/Mathlib.h:557: previous declaration of `Rf_stirlerr' make[3]: *** [stirlerr.o] Error 1 [20] /home/mfa5/gilp/R-versions/R-devel : uname -a SunOS mfa99579 5.6 Generic_105181-11 sun4u sparc SUNW,Ultra-5_10

I'm a novice with gdb but the following is the result of a segfault problem I've been having with 1.2.0. If there is something else I should do to get more useful information at this point, then someone please let me know. Paul Gilbert ______ [5] /home/mfa5/gilp/zzot : R -d gdb GNU gdb 4.17 Copyright 1998 Free Software Foundation, Inc. GDB is free software, covered by the GNU General

Hi, I am new to clustering and was wondering why pvclust using "maximum" as distance measure nearly always results in p-values above 95%. I wrote an example programme which demonstrates this effect. I uploaded a PDF showing the results Here is the code which produces the PDF file: ------------------------------------------------------------------------------------- s <-