similar to: Sweave: Avoiding recompilation of figures

Depending on an R computation I would like to include an Sweave documents in the main Sweave document. How can I do it? So I was thinking .... to use Latex features : \newif\ifpaper \ifpaper \SweaveInput{"my1.Rnw"} \else \SweaveInput{"my2.Rnw"} \fi But how do I set paper to true or false given an \Sexpr ?? \papertrue % or \paperfalse Any ideas? cheers -- Witold

Sorry, I should have really started a new thread with this because really it is a new question only loosely related to the first Q. Thanks for the assist. As suggested I switched over to sweave. I have a lot of .tex tables that I > have already created that I was previously inserting into my tex document > (using \input). The journal I plan on submitting to eventually wants the >

Hello everyone. I am in the process of writing a book in Latex with Texshop, on Mac. This book contains a lot of R code, hence the need to use Sweave. I was able to compile Rnw files, and to sync back and forth from the pdf to the source Rnw. My problem now is that the book is divided in Chapters, and every chapter is in its own Rnw file. I can compile them from the main one (book.Rnw) using the

Dear All, I have been using Sweave (mainly via the Sweave.sh script) and really like it. I am working a paper (using Sweave, of course) which includes several time-consuming computations, and it gets tedious to re-compile the whoel thing every time I made changes. Then I discover the "cacheSweave" package, which seems the right solution to my problem. I only have on problem. Here is

Dear all, When I use the cacheSweave package together with the Sweave option keep.source = TRUE, all the LaTeX code before the Sweave code chunk is included in the TeX file to be compiled. For example, with the following Sweave file \documentclass[12pt]{article} \usepackage[nogin]{Sweave} % Sweave options \SweaveOpts{keep.source=TRUE, strip.white=TRUE, eps=FALSE, pdf=TRUE} \begin{document}

Is there some way to encourage \SweaveInput{foo} to find foo in a subdirectory of a file tree? Something along the lines of the behavior of list.files(<stuff>, recursive=TRUE). This would be very helpful at calling small modular files, such as solution sets and the like. I couldn't see anything in the documentation, and I looked in the source code, but it seems that

Hello, I tried looking for a Sweave-specific list but didn't find one, nor did I find an answer via google, so will send this question to the general R list. Please feel free to point me in the right direction. I am using Sweave and would like to have a single .Rnw document that generates 1) a summary report, 2) a full report, 3) slides for a talk. I think my material lends itself to have

Does anybody have a workable system to run an Rnw document through R-Sweave when necessary, but to just run it through LaTeX if no new R calculations are needed? I.e., the figures already exist, I do not need R to do more work for me, so I send the document straight to LaTeX. I want to leave open the option that I might need to run the document through Sweave in the future, so I don't want

Hello all, I would like to ask several questions regarding cacheSweave: 1) Is there a way to set "cache=true" globally? (I tried it using \SweaveOpts but it didn't seem to work) 2) Is there a way to "flush" specific cache once it is created? (other then erasing the entire cache directory)? Changing the code in the code chunk seems to do it, but I am not sure to what

Hi, Is there a way to turn off the automatic inclusion of "./" at the beginning of a path specified in an \SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like

Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from too far down the input file (the shift is the number of lines of the included file). Is that known? Searching didn't turn up anything, yet I think there are more people than just me using keep.source. Example: $

Hello everyone! I need to include the confidence interval bar in a grouped barplot. I've found some options on the web, but none of them solved my problem. The question is: my barplot was created using vectors for each pair of bar and them combining them using cbind. I mean: a=c(10,15) b=c(20,24) c=c(21,23) ... hei=cbind(a,b,c) graph1=barplot(hei, beside=T,...) I've tried to include

(on-list) Hello Cameron On Fri, 6 Aug 2010 19:02:22 +0100 Liviu Andronic <landronimirc at gmail.com> wrote: > On Fri, 6 Aug 2010 11:30:59 -0600 > Cameron Bracken <cameron.bracken at gmail.com> wrote: > > There is no real good way to deal with this in Sweave. Sweave does > > not actually know anything about the graphics it is creating, all > > it knows it that a

Hello, I am working with graph and adjacency matrix, the package 'graph' seems to be appropriate for this. An example in the package > mat <- rbind(c(0, 0, 1, 1), + c(0, 0, 1, 1), + c(1, 1, 0, 1), + c(1, 1, 1, 0)) > rownames(mat) <- colnames(mat) <- letters[1:4] > graph1 <- new("graphAM", adjMat=mat) > graph1 A

Dear R-community, I created 5 different xyplots and graphed all of them with the print command on one page (e.g. print(graph1, split=c(1,1,1,5), more = T) ... print(graph5, split=c(1,5,1,5), more =T) Using the above commands separates each graph by a white space. However, since the graphs do share the same x-axis, I was wondering if there is a way to concatenate graph1 through 5 so

Hello! I was just wondering if Sweave can work with \input or \include LaTeX commands. So, is it aware of such a possible hierarchy in documents. I would test that, but I don't have such a report available at the moment. I thought of that when I was writting shell script for Sweave from command line and I have solved that part there. -- Lep pozdrav / With regards, Gregor GORJANC

Dear R user, I am using Sweave to write my reports with R code. Unlucly my code take a lot of time to run, and I don't want to run it multiple time, if possible, as I am still developping the tools. It seems that a sweave run does not save the enviroment at the end of the process, is there a way to avoid to lunch multiple time the same commands? maybe it could be possible to store chunck of

hello: Do any one know how to set sweave option by variable, for example I want set some of my selected code chunk with: <<eval=needRun>>= rather than <<eval=TRUE>>=, so I can change the action only in the head by change the variable "needRun" one times. I have tried use "\Def" and "\newcommand", both do not work, so I suppose it is related

I use 1.7.0 version under Windows XP. Problem: When graphics device history recording function turned on, suppose I source a file containing lines: plot(graph1) plot(graph2) I see the graph2 in the graphic device, assuming graph2 is the last plot in the file. Now using "Previous" under history menu, I get graph1 as expected. But after that, using "Next" does not show graph2.

Hi all, I use the excellent packages rjags and cacheSweave, and unfortunately seem to have found an incompatibility between them. Below are a minimal .Rnw file and corresponding JAGS model file which illustrate the problem: *** JAGS model file; name=j.bug *** model { mu ~ dnorm(0,1.0E-5) sigma ~ dunif(0,100) for(i in 1:length(y)) { y[i] ~ dnorm(mu,sigma) } } *** *** .Rnw