similar to: How do i read the source code of "biplot"?

Hi All, I have tried to find an answer within documentation, but I cannot: o How can call a class "slot" without knowing the name a priori? E.g., let's say I use the "pcaMethods" library to create a "pcaRes" object. How can I call parts of that object without using the specific names of the object in the call? example code: library(pcaMethods)

Hi there, I''m using Log4r in my rails projects. On log.error an email is sent using the EmailOutputter. I know changed the EmailOutputter to include a global var in the subject (MDC) since the subject is normally static. I want to set this var to the exception message, so it is sent as the subject. Can anyone tell me how to do this in rails? Basically: raise e or some other cause

Dear R-Help, I'm hoping to find a Multinomial Nested Logit package in R. It would be great to find something analogous to "PROC MDC" in SAS: > The MDC (Multinomial Discrete Choice) procedure analyzes models > where the > choice set consists of multiple alternatives. This procedure > supports conditional logit, > mixed logit, heteroscedastic extreme value,

with pred.pca<-predict(splits[[i]]$pca,trainingData at samples)[,1:nPCs] dframe<-as.data.frame(cbind(pred.pca,class=isExplosive(trainingData,2))); results[[i]]$classifier<-ksvm(class~.,data=dframe,scaled=T,kernel="polydot",type="C-svc", C=C,kpar=list(degree=degree,scale=scale,offset=offset),prob.model=T) and a degree of 5 i get an error of 0 reported by the ksvm

Hi! Is there an easy way to add to the scree-plot labels to each value pertaining to the cumulative proportion of explained variance? Thanks and a happy new year Anne ---------------------------------------------------- Anne Piotet Tel: +41 79 359 83 32 (mobile) Email: anne.piotet@m-td.com --------------------------------------------------- M-TD Modelling and Technology Development PSE-C

on our cluster that has been running lustre for about 1 month. I have 1 MDT/MGS and 1 OSS with 2 OST''s. Our cluster uses all Gige and has about 608 nodes 1854 cores. We have allot of jobs that die, and/or go into high IO wait, strace shows processes stuck in fstat(). The big problem is (i think) I would like some feedback on it that of these 608 nodes 209 of them have in dmesg

Hello, I am having trouble installing the server modules for lustre 2.1.4 and use mellanox''s OFED distribution so we may use infiniband. Would you folks look at my procedure and results below and let me know what you think? Thanks very much! The mellanox ofed installation builds and installs some kernel modules too, so I used this method to ensure OFED compiled against the correct

Chris, Perhaps you need to perform some write_conf like command. I''m not sure if this is needed in 1.6 or not. Shane ----- Original Message ----- From: lustre-discuss-bounces at lists.lustre.org <lustre-discuss-bounces at lists.lustre.org> To: lustre-discuss <lustre-discuss at lists.lustre.org> Sent: Fri Mar 07 12:03:17 2008 Subject: Re: [Lustre-discuss] Multihomed

Hi, I want some config depending on memorysize. What I tried was if ($memorysize >= 256 * 1024*1024) { ... } But this fails because $memorysize is a string (and contains a "G") and can''t be compared to an int. Are all facts strings? How do I work with numbers? regards, Andreas -- Andreas Kuntzagk SystemAdministrator MDC Berlin / BIMSB Tel.: +49 30 9406 2997 --

dear all, I have some very long strings and would like to break up each long string into multiple strings with a fixed length, e.g. to break up abcdefghijkl into abc, def, ghi, jkl I tried a couple of commands but was not successful. Any help will be appreciated. Best, Jimmy -- View this message in context:

Hi! We''ve started to poke and prod at Lustre 1.6.4.1, and it seems to mostly work (we haven''t had it OOPS on us yet like the earlier 1.6-versions did). However, we had this weird incident where an active client (it was copying 4GB files and running ls at the time) got evicted by the MDS and all OST''s. After a while logs indicate that it did recover the connection

Hi, Lustre manual 1.6 v18 says that that in production lustre debug level should be set to fairly low. Manual also says that I can verify that level by running following commands: # sysctl portals.debug This gives ne following error error: ''portals.debug'' is an unknown key cat /proc/sys/lnet/debug gives output: ioctl neterror warning error emerg ha config console cat

Dear all, I have DNA sequence data which are fasta-formatted as >gene A;..... AAAAACCCC TTTTTGGGG CCCTTTTTT >gene B;.... CCCCCAAAA GGGGGTTTT I want to load only the lines that start with ">" where the annotation information for the gene is contained. In principle, I can remove the sequences before loading or after loading all the lines. I just wonder if there's a way to

This is the strangest problem I have seen. I have a lustre filesystem mounted on a linux server and its being exported to various alpha systems. The alphas mount it just fine however under heavy load the NFS server stops responding, as does the lustre mount on the export server. The weird thing is that if i mount the nfs export on another nfs server and run the same benchmark (bonnie) everything

very similar, only two are weird: 1st from MacOSX my (laptop) and from Windows running perfectly, never interrupted. 2nd To the solution was not within this thread, and I do not believe that it is impossible to solve.

Hi, I need to export to LaTex the summary of a PCA. So: myPCA <- prcomp(myDF) mySummary <- summary(myPCA) # print(xtable(mySummary)) How can I export to LaTeX not all the summary but only the first nPCs?? Best Riccardo

Well i'm using Ubuntu [Lucid] and running WoW via Wine [latest version] but there are some issues with the graphics, and moreso the lagg. Graphic issues: Black under players and npcs and Bugged textures for player armor and skin [Image: http://img149.imageshack.us/img149/3918/screenshot1wj.png ] http://img149.imageshack.us/img149/3918/screenshot1wj.png Lagg Game laggs rly bad, like as if i

I've been using the pcaMethods to develop a scores matrix ======================================= data(iris) pcIr <- pca(iris[,1:4], method="nipals", nPcs=3, cv="q2") test <- scores(pcIr) ======================================== What I'm looking to do is to use lattice's barchart to plot the scores something like below, but expanded to all the scores

Hi, I am a new R user and am trying to construct a palaeoenvironmental transfer function (weighted averaging method) using the package rioja. I've managed to insert the two matrices (the species abundance and the environmental data) and have assigned them to the y and x values respectively. When I try and enter the 'WA' function though, I get an 'Error in FUN' message (see

Hello, I am trying to complete a PCA on a set of standardized ring widths from 8 different sites (T10, T9, T8, T7, T6, T5, T3, and T2). The following is a small portion of my data: T10 T9 T8 T7 T6 T5 T3 T2 1.33738 0.92669 0.91146 0.98922 0.9308 0.88201 0.92287 0.91775 0.82181 1.05319 0.92908 0.97971 0.95165 0.98029 1.14048 0.77803 0.88294 0.96413 0.90893 0.87957 0.9961 0.74926 0.71394 0.70877