similar to: packages install dependencies

Hi I have been trying to get the R Extention supportware going for a while now and have been running to an error I cannot figure out. I am hoping someone here will recognize whats going on and what i may be messing up. After installing all the components - Rtools, Active Perl, and minGW I created the file structure using package.skeleton(name = "test") with only the functions i want

Hi I am still trying to wrap up a package using Rcmd (in windows 2000 professional with R 1.8.1). I have made some progress - and now at least Rcmd check works - it still giving me an error message when it creates latex help files though. Thus I get: c:\rpack> Rcmd check test * checking for working latex ... OK * using log directory 'C:/rpacks/test.Rcheck' * checking for file

Hi! My Samba 4 system seems to be running reasonably well, but... I am getting the following error: TSIG error with servier: tsig verify failure Faied nsupdate: 2 yadda, yadda. This is from the command *samba_dnsupdate --verbose --all-names *All I can find on the web is time synchronization problems. Any ideas? I can send a full transcript if it would help.. Thanks! -jimc

Hello, I have come across two separate packages that have a Makefile in inst/doc which use the R_HOME variable. In both cases, the path to R_HOME gets munged in such a way that commands that include R_HOME fail on Windows: For example, one Makefile, for the xmapcore package ( https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xmapcore/username/password: readonly) has this:

Hi, It's unfortunate that with recent revisions of R 2.13 (this appeared in revision 54640, March 2), 'R CMD build' now removes empty dirs in the package. People might have good reasons for having empty dirs in their packages. For example, in Bioconductor, we have some tools to automatically generate annotation packages and those tools are implemented in software packages that use

I am having a strange problem with an asterisk servier using R2 Unicall in Mexico. Most calls go through fine but some of them give me an error like this: -- Executing Dial("SIP/86-db41", "Unicall/g2/014448343600") in new stack -- Called g2/014448343600 Feb 9 21:44:39 WARNING[23069]: chan_unicall.c:2644 handle_uc_event: Unicall/2 event Dialing Feb 9 21:44:45

A package uses VignetteEngine: knitr; the package itself does not Suggests: knitr, but it Suggests: BiocStyle which in turn Suggests: knitr. Nonetheless, R CMD check fails indicating that a package required for checking is not declared. Is it really the intention that the original package duplicate Suggests: knitr? This is only with a recent R. In detail, with $ Rdev --version|head -3 R Under

Dear list, It seems that a package (pkgB) using another package (pkgA) with S4 generics formed by taking existing functions (for example 'plot') must not import the existing functions ('plot') in its namespace to avoid the warning "replacing previous import: plot". Suppose we use the simple 'import' directive in the name space of pkgB. pkgA and pkgB files would

I have already recieved two very helpful replies. Let me describe the problem we are trying to solve more clearly -- one of the suggestions was along a line I'd never thought of, and I'd like to encourage more! R is being used in a microarray/QC situation, in essentially a batch mode. The applications that are "running the show" in terms of interacting with the user's

Dear R-helpers, I run R version 2.8.1 (2008-12-22) on i386-apple-darwin8.11.1 I would like to call R from Java. I downloaded SJava_0.69-0.tar.gz, and then issued the command suggested on http://www.omegahat.org/ RSJava/ : % R INSTALL -c SJava_0.69-0.tar.gz ARGUMENT 'INSTALL' __ignored__ WARNING: unknown option '-c' ARGUMENT 'SJava_0.69-0.tar.gz' __ignored__ I then

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I was wondering if anyone could point me in the right direction for reading up on writing tests in R. I'm writing some functions for inclusion into a package and would like to test them to ensure they're doing what I expect them to do. Are these approaches used for testing packages in CRAN? Cheers, Nathan - -- -

I am trying to use smbmount. I am using Samba 2.0.0 The smbmount command I am using is smbmount //greg/c /mnt/gregc -I 90.0.0.2 It apparrently works. I get the following messages: Added interface.......bla bla Servier time is ........bla bla Timezone is UTC-6.0 Domain ........ Connected as guest security = user smb: \> But I can not do anything. Nothing works. Not ls, dir,

Hello Asterisk Community, Does somebody had used an IBM X3650 server with Asterisk? we would like to know if this servers are reliable and works OK with linux and Asterisk? Does some of you has this servier with asterisk on production? should we install an special BIOS (linux bios) in order to make this work better? Regards -- Saludos Danny Dias SkypeID: danny.dias1 -------------- next part

Hi, I am doing my way on R, with much experimenting. So, I am trying to plot a 3d graphic ussing "persp" and entering a data set (attached) of UTM coordinates as x,y and a pH values as z. However when I try an error message comes out telling that increasing x and y values are expected. Jus ordering the first vector does not help, and, of course, order the first two independently

Ok I've fed this problem with about five hours of my time to post to a list about it. nmbd does not appear to be doing what it should. Why I'm not certain. The unix host (running samba) is not appearing in on the windows browse list (i.e. it's not showing up in the network neighbourhood). when I run nmbd with -d2 I get the following: Netbios nameserver version 2.2.8 started.

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

R : Copyright 2002, The R Development Core Team Version 1.5.1 (2002-06-17) > install.packages("O:/Rpack/mscalib.zip", .libPaths()[1], CRAN = NULL) updating HTML package descriptions Warning message: error -1 in extracting from zip file > install.packages("O:/Rpack/zzz.zip", .libPaths()[1], CRAN = NULL) updating HTML package descriptions Warning message: error -1 in

Hello All, I am having trouble finding a specific * piece of software so I thought I would see If you guys can help me get my terminology clear. First off let me premise this with "no, this is absolutely not for doing call marketing". I need to make my Asterisk box call a group of people and play them a message. My company deals with education so we need to do follow ups if students

Based on some testing it seems to me that if I have a package with a dataset in /data a Sweave vignette in inst/doc (but no associated pdf file) the vignette loads the data in /data through data(dataset) and I do a R CMD build R will try to build the pdf version of the vignette, but will be unable to find the dataset in data because the package is not yet installed. However, if I do

Hi! Where to set R_LIBS? I have .Renviron with the line. R_LIBS=/package/R/R-1.5.0/linux/lib/R/library/;/home/wolski/Rpack/ in my home directory but cant access any library stored in the /home/wolski/Rpack/? Eryk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",