similar to: R: Colouring phylogenetic tip labels and/or edges

Displaying 20 results from an estimated 600 matches similar to: "R: Colouring phylogenetic tip labels and/or edges"

2009 Nov 12
1
Transforming a dataframe into a response/predictor matrix
I currently have a data frame whose rows correspond to each student and whose columns are different variables for the student, as shown below: Lastname Firstname CATALOG_NBR Email StudentID EMPLID Start 1 alastname afirstname 1213 *@uark.edu 10295236 # 12/2/2008 2 anotherlastname anotherfirstname 1213 **@uark.edu ## 10295236 9/3/2008 Xattempts Q1
2007 Feb 20
0
Standardized residual variances in SEM
Hello, I'm using the "sem" package to do a confirmatory factor analysis on data collected with a questionnaire. In the model, there is a unique factor G and 23 items. I would like to calculate the standardized residual variance of the observed variables. "Sem" only gives the residual variance with the "summary" function, or the standardized loadings with the
2011 Nov 20
2
Adding two or more columns of a data frame for each row when NAs are present.
I am fairly new to R and would like help with the problem below. I am trying to sum and count several rows in the data frame yy below. All works well as in example 1. When I try to add the columns, with an NA in Q21, I get as NA as mySum. I would like NA to be treated as O, or igored. I wrote a function to try to count an NA element as 0, Example 3 function. It works with a few warnings,
2011 Nov 01
2
Removal/selecting specific rows in a dataframe conditional on 2 columns
Dear list, After reading different mails, blogs, and tried a few different codes without any success, I am asking your help! I have the following data frame where each row represent a survey unit with the following variables: > names(RV09) [1] "record.t" "trip" "set" "month" "stratum" "NAFO" [7]
2003 Apr 04
3
trellis.graphic in for-loop
Hi list, I am unsuccessfully trying to produce a serious of trellis barcharts from within a for-loop. The barcharts work outside the loop. What am I missing? Example attached. Thanks Herry #XXXXXXXXXXXXXXXXXXXXXX trellis.device(bg="white") trellis.par.get("fontsize")->fontsize fontsize$default<-16 trellis.par.set("fontsize",fontsize)
2013 Sep 12
0
question about dovecot-auth
hello : i'm new to dovecot-list: i have a question about dovecot auth: the database of dovecot-auth is memcached, when i test 200 users login by imap at the same time, there are some error like this: Is there any Parameter matches wrong ? =====================error========================= Sep 12 10:14:15 IMAP(q56 at t.com): Info: Quota warning: bytes=1048471142 (90%) messages=0
2012 Feb 16
1
help with ancestral.pars in phangorn package
Hello, I'm struggling with understanding the output on the ancestral.pars() command from the phangorn package, I'm new to doing phylogenetic analyses using R. I used it on nucleotide data, and it works fine, I'm just not sure how to read the output. The output is phyDat class, and outputs a matrix for each node/leaf in the tree. I figured out that the matrix columns represent the four
2010 Apr 07
2
recoding variables-recode not working
Hi, I have numerical variable that I want to recode into categories '0' and '1 and more' and do analysis with that data. I have tried various of possibilities to do so, but I am sucked and nothing is working. recode(Q12, "0='A';1:30='B'") cut(Q12, breaks=c(0,1,30), lables=c('0', '1 and more')) cat(Q12, "0=0;1-33=1") What should
2011 Feb 20
2
Problem using F77_CALL(dgemm) in a package
Dear R-devel, I've written a numerical solver for SOCPs (second order cone programs) in R, and now I want to move most of the solver code into C for speed. I've written combined R/C packages before, but in this case I need to do matrix operations in my C code. As I have never done that before, I'm trying to write some simple examples to make sure I understand the basics. I am stuck
2016 Jul 28
0
[PATCH] Optimize silk_LPC_analysis_filter() for ARM NEON
Created corresponding unit test. --- silk/LPC_analysis_filter.c | 8 +- silk/SigProc_FIX.h | 8 +- silk/arm/LPC_analysis_filter_arm.h | 60 +++++++ silk/arm/LPC_analysis_filter_neon_intr.c | 176 +++++++++++++++++++++ silk/arm/arm_silk_map.c | 14 ++
2001 May 18
1
Personal Ancestral and Wine
Hello, I am trying to get Personal Ancestral File (which is free Genealogy software from The Church of Latter Day Saints) to run with wine. I have tried configuring wine in different ways following different suggestions in the HOWTOs and Wine user guides with varying results. I have also tried installing the software using Wine rather than just running the windows-installed program.
2003 Jan 29
1
RODBC sqlSave Error
Hi, i get error after using a data.frame with subset for "sqlSave". What can i do ? It seems that lines like this in a data.frame structure are after subset deleted and cause the error ? - attr(*, "variable.labels")= Named chr "CUSID" "Welle" "Arbeitgeberfavorit1" "Aktuelle Bewerbungssituation" ... ..- attr(*, "names")=
2009 Jan 06
0
problems with ace (ape-package)
Hi everyone I am trying to reconstruct ancestral character states with R. I used the ace function of the package ape. I have discrete characters and tried to use the ER and ARD model. The problem is, that I get negative lik$anc values. Does anybody by chance have an idea what might be wrong? Thanks in advance [[alternative HTML version deleted]]
2016 Apr 19
0
Cannot compile speexdsp 1.2rc3 on ARM64
Hi I'm new to speex list but joined because I'm needing to port the Neon to ARM64. On that function, saturate_32bit_to_16bit(), I noticed the ifdef's are wrong. The first version is for normal arm 32 bit arm and should be used for arm32 and thumb2 but not thumb1. The second version is 32 bit neon and should be #ifdef __ARM_NEON__ I've done a third version which is 64 bit neon.
2010 Jul 30
4
OT dovecot w/postfix, mysql , postfix does unnecessary lookups
I know this unnecessary lookups question is really a postfix one, but I'm curious if anyone else sees the behaviour of postfix continuing looking up users after it clearly have got its answer that it is "not a local domain" response. (this msg is an extract from what I sent to WV some time ago, with him showing absolutely no interest, I got bored tonight so thought I'd throw
2016 Aug 09
0
Cannot compile speexdsp 1.2rc3 on ARM64
anyone know how to get the aarch64 fork pulled into the mainline speexdsp? The code is provided in the bug report https://github.com/xiph/ speexdsp/issues/7 On Fri, Jul 29, 2016 at 5:21 PM, Frank Barchard <fbarchard at google.com> wrote: > I've filed a bug for aarch64 > https://github.com/xiph/speexdsp/issues/7 > > and provided the port in a fork with a pull request. We
2016 Jul 30
2
Cannot compile speexdsp 1.2rc3 on ARM64
I've filed a bug for aarch64 https://github.com/xiph/speexdsp/issues/7 and provided the port in a fork with a pull request. We need someone to review/merge in the pull request? It provides the source code, but my testing was under Android builds, so there would be some configure changes needed to build it stand alone. On Tue, Apr 19, 2016 at 4:32 PM, Frank Barchard <fbarchard at
2007 Mar 19
1
Why is app defaulting to Captain Podd font?
I'm running Personal Ancestral File (PAF) 5.2 under Wine 0.9.26, and it defaults to the bizarre "Captain Podd" font as its default screen and print font. It appears there are no knobs or registry entries to override this default font for some things when printing. My Wine is compiled from source to include the patch fix for bug #5669 (unrelated to fonts and printing). I'm
2017 May 08
0
2 patches related to silk_biquad_alt() optimization
Ping for comments. Thanks, Linfeng On Wed, Apr 26, 2017 at 2:15 PM, Linfeng Zhang <linfengz at google.com> wrote: > On Tue, Apr 25, 2017 at 10:31 PM, Jean-Marc Valin <jmvalin at jmvalin.ca> > wrote: > >> >> > A_Q28 is split to 2 14-bit (or 16-bit, whatever) integers, to make the >> > multiplication operation within 32-bits. NEON can do 32-bit x
2005 Apr 19
1
Antwort: Re: Antwort: Re: OpenSSL Installation Problem after Migration AIX 4.3.3 to AIX 5.2
Hi # lslpp -l perl.rte Fileset Level State Description ---------------------------------------------------------------------------- Path: /usr/lib/objrepos perl.rte 5.8.0.0 COMMITTED Perl Version 5 Runtime Environment # lppchk -vm3 # perl -V Summary of my perl5 (revision 5.0 version 8 subversion