similar to: Rprofile.site?

I currently set the Bioconductor repository in my .Rprofile using this code (which needs editing for every version number change of Bioconductor): # Choose repositories repos <- structure(c(CRAN="http://streaming.stat.iastate.edu/CRAN", CRANextra="http://www.stats.ox.ac.uk/pub/RWin",

Hello All: I'm still unable to get Rprofile.site to set, e.g., options(max.print=222), as I did with previous versions of R. I just found similar questions posed by Trevor Miles and Ross Bowden with replies by Uwe Ligges and Duncan Murdoch. In addition to the things I tried documented below, I also copied Rprofile.site into "R_HOME/etc/i386" and

Hello, Is it possible to change the default repositories? I've already changed the list in the repositories file under etc/ this is how my repositories file under R/etc looks like: row name menu_name URL default source win.binary mac.binary CRAN CRAN @CRAN@ TRUE TRUE TRUE TRUE BioC Bioconductor http://www.bioconductor.org TRUE TRUE TRUE FALSE

Hi all, The following fails for me (on OS X, although I imagine it's the same on other platforms using libcurl): options(download.file.method = "libcurl") options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = "http://www.stats.ox.ac.uk/pub/RWin")) install.packages("lattice") ## could be any package gives me: >

In fact, this does reproduce on R-devel: > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = + "http://www.stats.ox.ac.uk/pub/RWin")) > install.packages("lattice") ## could be any package Installing package into ?/Users/kevinushey/Library/R/3.3/library? (as ?lib? is

Hi Martin, Indeed it does (and I should have confirmed myself with R-patched and R-devel before posting...) Thanks, and sorry for the noise. Kevin On Tue, Aug 25, 2015, 13:11 Martin Morgan <mtmorgan at fredhutch.org> wrote: > On 08/25/2015 12:54 PM, Kevin Ushey wrote: > > Hi all, > > > > The following fails for me (on OS X, although I imagine it's the same >

Hello: I have so far failed to get Rprofile.site to be processed in R 2.15.0 under Windows 7 as I remember having done it in previous version of R. For example, I've included "options(max.print=222)" in "R_HOME/etc/Rprofile.site" (with and without the environmental variable R_HOME set to the install directory of R 2.15.0 in advanced system settings): When I

Hi, I'm new to R. Apologies if this is a simple query, I've searched the mailing lists and docs but can't find a solution to my problem. I'm trying to make some packages available on our intranet. During development the 'intranet' is a webserver running on localhost. * When I call "install.packages" I get a mesage about not being able to access 'index

Hi everyone, I've followed the instructions from R-Admin Section 6.6 for creating a local repository. I've modified my Rprofile.site file to add the local repository to my repos, but I haven't been able to successfully install my package from the repo. Here's the code that I've run. ################################## sessionInfo() getOption("repos")

Full_Name: Robert Baer Version: 2.6.1 OS: Windows XP Submission from: (NULL) (198.209.172.95) It would be wonderful if the CRAN mirror had an easy way to set a "default CRAN mirror". Current behavior is to have to choose a CRAN mirror the first time a package is installed in a session. The closest mirror site is always the same for me, and I wouldn't wish to change it unless it

I'd like to follow up on this one. It may be that I have misunderstood something, but on both R devel (2012-02-22 r58452) and R 2.14.1 patched (2012-02-18 r58394) I can't seem to avoid loading ~/.Rprofile when I run 'R CMD <cmd>', e.g. R CMD build. For me, the loading of ~/.Rprofile by 'R CMD' started a few weeks ago, and I haven't seen it before. More details

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

Full_Name: John Gavin Version: 2.1.0 patched 18-04-05 OS: windows XP SP2 Submission from: (NULL) (139.149.1.203) Hi, I suspect that there may be a bug in utils::setRepositories(). Starting with > getOption("repos") CRAN CRANextra "@CRAN@"

I have some questions and observations about these: Will these replace manually setting options(CRAN), which doesn't work in R-2.1.0? In R-2.1.0, setRepositories() looks to see if options("repos") contains a CRAN entry and will not override that CRAN entry even if the $R_HOME/etc/repositories file (which setRepositories reads from) contains a CRAN entry. Why is this? The user

Dear list members (esp. Duncan), I've run into the following curious problem with Version 2.2.0 alpha for Windows: Options in the Profile file in R's etc directory don't appear to be set. (I habitually uncomment options(chmhelp=TRUE), to no effect in this case.) As far as I can see, the only thing non-standard about my installation is that I put R 2.2.0 alpha under c:\R rather than

On 08/25/2015 12:54 PM, Kevin Ushey wrote: > Hi all, > > The following fails for me (on OS X, although I imagine it's the same > on other platforms using libcurl): > > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = > "http://www.stats.ox.ac.uk/pub/RWin")) >

On 08/25/2015 01:30 PM, Kevin Ushey wrote: > Hi Martin, > > Indeed it does (and I should have confirmed myself with R-patched and R-devel > before posting...) actually I don't know that it does -- it addresses the symptom but I think there should be an error from libcurl on the 403 / 404 rather than from read.dcf on error page... Martin > > Thanks, and sorry for the

I would appreciate some advice on what the preferred contents of RProfile.site vs. .Rprofile should be. A .First() function can reside in either one, but is it preferred to place it in .Rprofile? I currently use .First() in .Rprofile files placed in separate directories used for different RStudio projects. Thank you [[alternative HTML version deleted]]

Thanks, Here's the error, for example: > install.packages("mgcv") Installing package into 'C:/Users/pl39/Documents/R/win-library/3.4' (as 'lib' is unspecified) trying URL 'https://mirrors.nics.utk.edu/cran/bin/windows/contrib/3.4/mgcv_1.8-23.zip' Content type 'application/zip' length 2775362 bytes (2.6 MB) downloaded 2.6 MB package 'mgcv'