similar to: How to improve, at all, a simple GLM code

Hi there, I have this code: Prepared_Data <- na.omit(read.csv("Prepared_Data.csv", header=TRUE)) pd <- Prepared_Data[,-3] ## data minus response variable lev <- sapply(pd,function(x) length(unique(x))) ## total parameters for n variables par(las=1,bty="l") plot(cumprod(lev),log="y") library(Matrix) m <- sparse.model.matrix(~.^2,data=pd) ncol(m)

Hi, This is my code (my data is attached): library(languageR) library(rms) library(party) OLDDATA <- read.csv("/Users/Abigail/Documents/OldData250412.csv") OLDDATA$YD <- factor(OLDDATA$YD, label=c("Yes", "No"))? OLDDATA$ND <- factor(OLDDATA$ND, label=c("Yes", "No"))? attach(OLDDATA) defaults <- cbind(YD, ND) set.seed(47) data.controls

Hi there, I am trying to fit a generalised linear model to some loan application and default data. The purpose of this is to eventually work out the probability an applicant will default. However, R seems to crash or die when I run "glm" on anything greater than a 5-way saturated model for my data. My first question: is the best way to fit a generalised linear model in R to fit the

Hello, I have a problem with creating an identity matrix for glmnet by using the contrasts function. I have a factor with 4 levels. When I create dummy variables I think there should be n-1 variables (in this case 3) - so that the contrasts would be against the baseline level. This is also what is written in the help file for 'contrasts'. The problem is that the function

All, For my understanding, I wanted to see if I can get glmnet predictions using both the predict function and also by multiplying coefficients by the variable matrix. This is not worked out. Could anyone suggest where I am going wrong? I understand that I may not have the mean/intercept correct, but the scaling is also off, which suggests a bigger mistake. Thanks for your help. Juliet Hannah

Hi Everybody! I must start with a declaration that I am a sparse user of R. I am creating a credit scorecard using a dataset which has a variable depicting actual credit history (good/bad) and 41 other variables of yes/no type. The procedure I am asked to follow is to use a penalized logistic procedure for variable selection. I have located the package "glmnet" which gives the complete

Dear All, Can the x matrix in the glmnet() function of glmnet package be a data.frame with numeric columns and factor columns? I am asking this because I have a model with both numeric and categorical predictors, which I would like to study with glmnet. I have already tried to use a data.frame, but with no success -- as far as I know, the matrix object can only have data of a single type. Is

We are workin on building a logistic regression using 1. We are doing a logistic regression with binary outcome variable using a set of predictors that include 8 continuous and 8 category predictors 2. We are trying to implement interaction between two variables (continuous and category or just continuous) The dataset is 200,000 rows and we are using glmnet, how can we model those two points ?

Hey, Does anybody have a regexp for validating URLs? I found this one and am trying to adapt it: ^(((ht|f)tp(s?))\:\/\/)?(www.|[a-zA-Z].)[a-zA-Z0-9\-\.]+\.(com|edu|gov|mil|net|org|biz|info|name|museum|us|ca|uk)(\:[0-9]+)*(/($|[a-zA-Z0-9\.\,\;\?\''\\\+&%\$#\=~_\-]+))*$ (http://www.experts-exchange.com/Web/Web_Languages/JavaScript/Q_21245168.html) I also found this one, but, um,

Hi all I am using the caret package and having difficulty in obtaining the results using regression, I used the glmnet to model and trying to get the coefficients and the model parameters I am trying to use the extractPrediction to obtain a confusion matrix and it seems to be giving me errors. x<-read.csv("x.csv", header=TRUE); y<-read.csv("y.csv", header=TRUE);

Hello, I am completely new to Speex and make files but I'm looking to build/ run Speex on the iPhone for decoding and potentially encoding. I've read that you can just copy the source into an XCode project which I tried but I started getting all kinds of compile errors. (1000+) There were things like missing references to ogg header files and so forth. Could someone explain

Hello list. For some reason, the makers of glmnet do not accept a dataframe as input. They expect the input to be a matrix, where the dummies are already precoded. Now I have created a sample dataset with . 11 factor columns with two levels . 4 factor columns with three levels . 135 continuous columns (from a standard normal) . 100 observations (rows) Say this dataframe is in dfrPredictors. What

Hi, I'm new to Speex and a little uncomfortable in C programming. I'm looking for a simple example of how I'd use Speex to decode a speex file read off of an network stream and pass the decoded samples to an audio player. I have speex running in an iPhone project and I started digging thru the speexdec.c example trying to refactor as I made sense of the API calls. The example is a

Hi, I run R on a server via SSH, over a terminal. After loading a specific package, how do I know what functions are in that package? Is there any way to list or display them? tia. -- View this message in context: http://www.nabble.com/Check-functions-in-package-tp24707084p24707084.html Sent from the R help mailing list archive at Nabble.com.

Hi all, I am using the glmnet R package to run LASSO with binary logistic regression. I have over 290 samples with outcome data (0 for alive, 1 for dead) and over 230 predictor variables. I currently using LASSO to reduce the number of predictor variables. I am using the cv.glmnet function to do 10-fold cross validation on a sequence of lambda values which I let glmnet determine. I then take

Hi, I am attempting to evaluate the prediction error of a coxph model that was built after feature selection with glmnet. In the preprocessing stage I used na.omit (dataset) to remove NAs. I reconstructed all my factor variables into binary variables with dummies (using model.matrix) I then used glmnet lasso to fit a cox model and select the best performing features. Then I fit a coxph model

Hi, is there any chance to install glmnet with gcc-4.5.2? For me it fails on all systems with: trying URL 'http://mirrors.softliste.de/cran/src/contrib/glmnet_1.7.tar.gz' Content type 'application/x-gzip' length 522888 bytes (510 Kb) opened URL ================================================== downloaded 510 Kb * installing *source* package ?glmnet? ... This package has only

Dear All, I want to generate survival curve with cox model but I want to estimate the coefficients using glmnet. However, I also want to include a strata() term in the model. Could anyone please tell me how to have this strata() effect in the model in glmnet? I tried converting a formula with strata() to a design matrix and feeding to glmnet, but glmnet just treats the strata() term with one

Seeing ''SSL_read'' errors being logged by puppetmaster. Anyone know what causes these or how to correct? They''re sporadic, not happening all the time or on all puppet runs. /var/log/puppet/masterhttp.log [2011-07-25 10:00:10] ERROR OpenSSL::SSL::SSLError: SSL_read:: internal error /var/log/messages Jul 25 10:00:10 cmd-box puppet-master[22572]: SSL_read:: internal error

The off dependencies are only for speexenc and speexdec, as far as I recall. If you omit those targets, you shouldn't have the ogg dependency issues. On Feb 10, 2010, at 22:21, Jean-Marc Valin <jean-marc.valin at usherbrooke.ca > wrote: > Unless you want to work on files (rather than RTP), you don't need any > of the stuff that uses ogg.h > > Jean-Marc > >