similar to: npRmpi trouble - mpi.comm.spawn causes segfault

Hello, the package snow is not working on a windows cluster with MPICH2 and Rmpi. There is an error in makeCluster: launch failed: CreateProcess(/usr/bin/env "RPROG="C:\Programme\R\R-2.5.1\bin\R" "OUT=/dev/null" "R_LIBS=" C:/Programme/R/R-2.5.1/library/snow/RMPInode.sh) on 'cl1' failed, error 3 - Das System kann den angegbenen Pfad nicht finden. I

Hi, I am using a cluster with LAM 7.1.3/MPI 2 and R 2.6.0. Rmpi version 0.5-5 is working very well. Now I have tested "Rmpi 0.5-6". During spawning the Rslaves I get an error: MPI_Error_string: error spawning process > sessionInfo() R version 2.6.0 (2007-10-03) x86_64-unknown-linux-gnu locale:

Hi I am trying to utilize my dual core processor (and later a High-performance clusters (HPC) ) by using the Rmpi, snow, snowfall, ... packages, but I am struggling at the beginning, i.e. to initialise the "cluster" on my dual core computer. Whenever I try to initialize it (via sfInit(parallel=TRUE, cpus=2) or mpi.spawn.Rslaves(nslaves=2) ), I get an error message: >

V; Sent via BlackBerry from T-Mobile -----Original Message----- From: r-help-request at r-project.org Date: Tue, 30 Sep 2008 12:00:06 To: <r-help at r-project.org> Subject: R-help Digest, Vol 67, Issue 31 Send R-help mailing list submissions to r-help at r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/r-help or, via email,

R-users, My question is related to earlier posts about benefits of quadcore over dualcore computers; I am trying to setup a cluster of windows xp computers so that eventually I could make use of 10-20 cpu:s, but for learning how to do this, I am playing around with two laptops. I thought that the package snow would come handy in this situation, but to use snow, I would probably need to install

Dear I have been trying to a program which requires "nprmpi". However, I have tried to install the downloaded zip file but get the error: "cannot open compressed file ''npRmpi_0.40-7.tar.gz/DESCRIPTION''" I tried the command: install.packages("nprmpi") but get the message "package ''nprmpi'' is not available" I then

Dear useRs, We are pleased to announce that versions 0.50-1 of the np package and its MPI-aware counterpart, the npRmpi package, are now available on CRAN: http://cran.r-project.org/web/packages/np/index.html http://cran.r-project.org/web/packages/npRmpi/index.html In these versions we add new functionality: - new methods for multivariate mixed-data bandwidth selection for unconditional and

Dear useRs, We are pleased to announce that versions 0.50-1 of the np package and its MPI-aware counterpart, the npRmpi package, are now available on CRAN: http://cran.r-project.org/web/packages/np/index.html http://cran.r-project.org/web/packages/npRmpi/index.html In these versions we add new functionality: - new methods for multivariate mixed-data bandwidth selection for unconditional and

Dear R users, A parallel implementation of the np package titled `npRmpi' is now available on CRAN. This package can take advantage of multiple core computing environments to reduce the run time associated with the methods contained in the np package. Kindly see the vignette for details and examples on modifying np code and running it in a parallel environment. You are requested to seek

Dear R users, A parallel implementation of the np package titled `npRmpi' is now available on CRAN. This package can take advantage of multiple core computing environments to reduce the run time associated with the methods contained in the np package. Kindly see the vignette for details and examples on modifying np code and running it in a parallel environment. You are requested to seek

Hi List, I'm using npRmpi to run some density equality tests and place the output into a matrix. I've put together some crude functions for the purpose, but I'm receiving the following error when npdeneqtest() reached the bootstrap; FATAL ERROR: Memory allocation failure (type DBL_VECTOR). Program terminated. I'm running Ubuntu Lucid 64bit with 4 cores and 12GB of memory. My R

Hi everybody! I have the next code which makes a reduction of the *a *variable in two slaves, using the Rmpi package. library(Rmpi) mpi.spawn.Rslaves(nslaves=2) reduc<-function(){ a<-mpi.comm.rank()+2 mpi.reduce(a,type=2, op="prod") return(paste("a=",a)) } mpi.bcast.Robj2slave(reduc) mpi.remote.exec(reduc()) cat("Product: ")

Hi everybody! I have the next code which makes a reduction of the *a *variable in two slaves, using the Rmpi package. library(Rmpi) mpi.spawn.Rslaves(nslaves=2) reduc<-function(){ a<-mpi.comm.rank()+2 mpi.reduce(a,type=2, op="prod") return(paste("a=",a)) } mpi.bcast.Robj2slave(reduc) mpi.remote.exec(reduc()) cat("Product: ")

??I installed Microsoft MPI. Then installed the foreach and Rmpi packages. Then built doMPI from source. mpi.remote.exec works. foreach hangs with the main process and all worker processes idle. I launch my script with mpiexec: "C:\Program Files\Microsoft MPI\Bin\mpiexec" -n 3 "C:\Program Files\R\R-3.2.0\bin\x64\Rterm.exe" --no-save -q -f "MPI Test.r" The

On FC10 with openmpi and mpich2 installed, the command "R CMD INSTALL Rmpi_0.5-7.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi" (or /usr/lib64/mpich2) fails with the error ''cannot find mpi.h". Doing a (s)locate indicates no header file labeled as such. Would appreciate any trailheads. TIA, V. -- Vince Fulco, CFA, CAIA 612.424.5477 (universal) vfulco1 at

Hello there, I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum, and here's what it says: ===================== [snip] --> Finished Dependency Resolution --> Running transaction check ---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased ---> Package

I'd like someone familiar with the R options initialization to comment on a difference of behavior within/without mpiexec I have a (.NET) application with embedded R that is proven to run in a single process: ./Sample1.exe on a Debian Linux with R 3.0.2 Running the same code with mpiexec, it fails at the R engine initialization: mpiexec -n 1 ./Sample1.exe Fatal error: you must

Dear All, I have created a virtual high performance computing (HPC) cluster of 6 compute nodes with MPICH2 using Xen-based Fedora 11 Linux 64-bit paravirtualized (PV) domU guests. Dom0 is Fedora 11 Linux 64-bit. My Intel Desktop Board DQ45CB has a single onboard Gigabit LAN network adapter. I am able to bring up the ring of mpd on the set of 6 compute nodes. However, I am consistently

Dear All, I have created a virtual high performance computing (HPC) cluster of 6 compute nodes with MPICH2 using Xen-based Fedora 11 Linux 64-bit paravirtualized (PV) domU guests. Dom0 is Fedora 11 Linux 64-bit. My Intel Desktop Board DQ45CB has a single onboard Gigabit LAN network adapter. I am able to bring up the ring of mpd on the set of 6 compute nodes. However, I am consistently

CentOS Errata and Bugfix Advisory 2013:1187 Upstream details at : https://rhn.redhat.com/errata/RHBA-2013-1187.html The following updated files have been uploaded and are currently syncing to the mirrors: ( sha256sum Filename ) i386: 4d9890eb6188a0e2b4cb664cec93cae75a4df4e2ef1f6360b4f9405e495f0175 boost-1.41.0-18.el6.i686.rpm 9856b6443740b8cbb217adeb51d90da211a5d395284712ec9e04554e2366eff7