similar to: dendrogramGrob cuts off dendrograms (latticeExtra)

Dear all, I am using the heatmap representations of latticeExtra package and I would be interested to draw color side bars representing the groups of a factor of interest. From my understanding of : > help(dendrogramGrob) ... The 'add' argument can be used for additional annotation at the base of the dendrogram. It should be a list with one component for each row,

Hello, I'm trying to learn how to use lattice and levelplot in particular. There are three elements of customizing the plots I'm stuck with: a) Is there a way to put borders around each "cell" within a level-plot. I'm trying to do something like the colsep/rowsep/sepcolor/sepwidth parameters of heatmap.2 in gplots b) Can I alter the line-width of dendrogram added

How would I set the "scales" property of a lattice levelplot, so that I can add specific annotations at specific positions? For example, I have a 200 x 1000 element levelplot. Along the y-axis (along the 1000-element axis) I would like to add annotations on the left side of the levelplot at elements 120, 300, 500, and 805, which represent clusters of interest. Currently I have

I am trying to determine how to customize the date and time display of system utilities and user programs using the locale settings. What I really want is some sort of utility program that does the same thing for CentOS as the Regions Settings Control Panel app. for MicroSoft Windows accomplishes, but I have no hope of seeing that. I have traced the login locale processing through /etc/profile

On Mon, 14 Jan 2019 16:27:04 -0500 Gilbert Soucy <gsoucy at 36pix.com> wrote: > Yes, I have tried testparam. All is OK . Note that I can write > anything for unix charset and testparm does not complain. > > Load smb config files from /etc/samba/smb.conf > rlimit_max: increasing rlimit_max (1024) to minimum Windows limit > (16384) Processing section

Hi, I have a script I can run step by step through the R interpreter and it works fine. I then run as a shell script with Rscript and it fails. The error message comes when I am creating a model matrix with model.matrix.default(). Error in `contrasts<-`(`*tmp*`, value = "contr.Treatment") : could not find function "is" Calls: model.matrix.default ->

I am trying, without success, to compile a custom locale for the utf-8 character set. I have issued this command: localedef --no-archive -f UTF-8 -i /usr/share/i18n/locales/en_CA at yyyy-mmm-dd en_CA at yyyy-mmm-dd.utf8 which produces the requisite files without reporting an error but which none-the-less insists on using the iso-8859-1 charset: LC_ALL=en_CA at yyyy-mm-dd locale charmap

Hi, I've begun to use the lme4 package, rather than nlme, for more flexibility during modelling, and running the examples in lmer I receive this error message: ---<---------------cut here---------------start-------------->--- R> (fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy)) Error in printMer(object) : no slot of name "status" for this object of class

I saw it also on some of my Ubuntu builds, but the issue went away after a make clean/make, so maybe give that a try. Best, luke On Wed, 24 Apr 2024, Ben Bolker wrote: > I'm using bleeding-edge R-devel, so maybe my build is weird. Can anyone > else reproduce this? > > View() seems to crash on just about anything. > > View(1:3) > *** stack smashing detected ***:

Hi, The following call: xyplot(incidence ~ year, melanoma, panel=panel.smooth) produces a blank plot region with an error message: Error using packet 1 plot.new has not been called yet > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=C

Hello, Suppose we need a function that takes a POSIXct object and need to calculate the time difference between it and GMT time: gmtDiff <- function(time) { time.gmt <- as.POSIXct(format(time, tz="GMT")) time.plt <- as.POSIXlt(time) dlstime <- ifelse(time.plt$isdst > 0, 1, 0) timezone <- as.numeric(difftime(time, time.gmt, units="hours"))

Hi, I can't pinpoint exactly since what R version I first noticed this error, but are others seeing this? R> vignette("grid") R> sh: : command not found instead of having the vignette displayed in the proper viewer? This is with: R> sessionInfo() R version 2.9.2 (2009-08-24) x86_64-pc-linux-gnu locale:

Hi, After the latest update of r-cran-* packages in sid, I'm getting the following message on startup: During startup - Warning message: package 'lattice' was built under R version 2.9.2 and help may not work correctly I haven't found anything wrong with the package's functionality so far though. ---<--------------------cut

Hi, I'm getting a segmentation fault as follows: ---<--------------------cut here---------------start------------------->--- R> begt <- as.POSIXct(strptime("10/01/2009 06:00:00", format="%d/%m/%Y %H:%M:%S"), + tz="GMT") R> tser <- seq(begt, by=5, length.out=91000) R> tser.trunc <- format(tser) Error: segfault from C

Hi, With current R devel and R 2.13.1: > aa=1:5 > save(aa, file="aa.rda", compress="xy") Error in identical(compress, "gzip") || compress : invalid 'y' type in 'x || y' Thanks! H. > sessionInfo() R version 2.13.1 (2011-07-08) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C [3]

Dear all, I am running R 2.8.1. under ubuntu, and I need to install the package "raster" but I get the following error: > install.packages("raster") Warning in install.packages("raster") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done

Hi, Doing 'R CMD check diveMove' is now throwing this message: Data codoc mismatches from documentation object 'sealLocs': Variables in data frame 'sealLocs' Code: id.time.class.lon.lat Docs: class id lat lon time with: R> sessionInfo() R version 2.10.1 (2009-12-14) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C

Hi, Using the following simple character vector representing a time series with fractional seconds: datetime <- c("20/09/2011 13:00:59.00", "20/09/2011 13:00:59.02", "20/09/2011 13:00:59.04") Conversion to POSIXct runs into problems; the second element is not interpreted correctly: ---<--------------------cut

Hi, The pdf function would not let me change the paper size and gives me the following warning: pdf("figure.pdf", width="6", height="10") Warning message: ?mode(width)? and ?mode(height)? differ between new and previous ==> NOT changing ?width? & ?height? If I use the option paper = "a4r", it does not give me a warning but still prints on a

Hi, > gctorture(TRUE) > setGeneric("foo", function(x, y) standardGeneric("foo")) [1] "foo" > setMethod("foo", c("ANY", "ANY"), + function(x, y) cat("calling foo,ANY,ANY method\n") + ) Error: protect(): protection stack overflow Sorry this is something I already reported one week ago here