similar to: Unwanted page break in Rd2pdf

Hi, I am trying to get write my first own package. I followed the instructions in "Creating R Packages: A Tutorial" and "Writing R Extensions". So far everything works really fine, the script works and even the man-pages don't show any problems during the check process. During "check" there is also the package-manual.pdf created. When I compare my manual to

Hi, I have a 1-column dataframe with rownames and I want to sort it based on the single column. The typical procedure that is recommended in diverse posts is to use order in the index. But that "destroys" my dataframe structure. Probabaly it is a very simple solution. Here is a short reproducable example: x <- c(1,3,51,2,34,44,12,33,2,8) df <- data.frame(x) rownames(df) <-

Hi, I have a dataframe and want to remove columns from it that are populated with a similar value (for the total column) (the variation of that column is 0). Is there an easier way than to calculate the statistics and then remove them by hand? A <- runif(100) B <- rep(1,100) C <- rep(2.42,100) D <- runif(100) df <- data.frame(A,B,C,D) # if want to conditionally remove column B and

Hi list, When using R CMD Rd2pdf, it is possible to set environment variable RD2PDF_INPUTENC to value "inputenx" and enjoy better support for UTF-8 characters (see ?Rd2pdf). This enables LaTeX package "inputenx" instead of "inputenc". Even better support for UTF-8 encoded characters can be had by better using the facilities provided by inputenx and making R CMD

Hi, I am looking for a way to save the result of a function, e.g the lm()-function to a file and reload it afterwards again. I'd like to do that in order to minimize the used memory when running the function in a loop. The actual function I want to store is the evaluate() from the dismo package. I tried it with save() and load() but I am not sure if that is the way I should do it as I

Hi, it is easiest to explain what I want to do by an example: lets assume there are two factors/variables: A <- c(1,2,3) B <- c(1,3,3) Now I would like to generate a list of strings that should look like ("A1_B1","A1_B2","A2_B1","A2_B2"). So actually the string contains all possible combinations of A and B (separated by _). This should be also

> The command Rd2pdf was rather useful for opening a package's manual > when you don't have access to the Internet (by using latex to pdf > conversion). However the way the function seems to operate changed at > version 2.14 of R. The noted changes listed on CRAN for this function > are as follows (which doesn't seem like it would affect my usage as > below): >

No, I do not get the same as you. I have tested with R-devel and R-patched compiled today. When I do R CMD Rd2pdf mpra I get (as reported a few days ago) Hmm ... looks like a package Converting Rd files to LaTeX Error : mpra/man/mpra-package.Rd:6: file './DESCRIPTION' does not exist whereas you (Kurt) reports that this works on zTree. When I do R CMD Rd2pdf mpra/man I get - a

Sorry for the noise. I assumed I could run this in the same directory as R CMD check. If I cd into the package dir, and run it like R CMD Rd2pdf man it works. I was a bit sleep deprived yesterday. The fact that the output starts by Hmm ... looks like a package threw me off. That output suggests it should work, I think. So I would suggests either 1) handling both package and man directories

When I include the macros \packageAuthor, \packageDescription, \packageTitle, \packageMaintainer in a XX-package.Rd file, R CMD Rd2pdf fails with $ R CMD Rd2pdf mpra Hmm ... looks like a package Converting Rd files to LaTeX Error : mpra/man/mpra-package.Rd:6: file './DESCRIPTION' does not exist This does not happen if I comment out 4 occurrences of these 4 macros in mpra-package.Rd.

When I run R CMD Rd2pdf on the man pages of a package, ie R CMD Rd2pdf man I get Converting Rd files to LaTeX Warning in parse_Rd("man/mpra-package.Rd", encoding = "unknown", fragment = FALSE, : man/mpra-package.Rd:6: unknown macro '\packageTitle' Warning in parse_Rd("man/mpra-package.Rd", encoding = "unknown", fragment = FALSE, :

Hi everyone, >From the currently available version of the package VBmix, I would like to retrieve the intermediate .tex file that generates the VBmix-manual.pdf file. Formerly, running R CMD check with --no-clean allowed to get this tex source from a hidden directory : this feature was removed, but can apparently still be accessed through R CMD Rd2pdf --no-clean. Surprisingly, while the

On the local machine the command R11 CMD Rd2pdf survfit.Rd works fine. R12 CMD Rd2pdf survfit.Rd fails with the message below. Converting Rd files to LaTeX ... survfit.Rd Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running 'texi2dvi' on 'Rd2.tex' failed. Messages: sh: texi2dvi: command not

Hi all, Sorry if I seem a bit pissed because I am! Basically, I have written some script and I wanted to make a "documentation" for it using .Rd format. ############################################################################ I followed the example here in http://stat.ethz.ch/R-manual/R-devel/library/utils/html/prompt.html created the file plot.default.rd in my directory. But

Dear list, I'm using the Sweave function in order to get some report. Here one chunk: <<echo=F,results=tex>>= report<-lapply(repor, function(x) { (print(xtable(data.frame(x[1:2,]), align="|l|rrr|"),floating=FALSE,tabular. environment="longtable",include.colnames=FALSE,size="\\small"))

Hello everybody I'm am trying to build a pdf out of the Rd files that i wrote for a package, so that I can attach it to my thesis. if i Run Rd2pdf (or Rd2dvi) I get this error massage: Hmm ... looks like a package Converting Rd files to LaTeX . Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

Hi, i want to plot empirical cumulative density functions for two variables in one plot. For better visualizing the differences in the two cumulative curves I'd like to log-scale the axis. So far I found 3 possible functions to plot ecdf: 1) ecdf() from the package 'stats'. I don't know how to successfully set the log.scales? Combining two plots is not a problem: plot(ecdf(x1))

Hi, I have two variables ranging both from 0 to 1 (n=500 each). Now I am interested in plotting them both in one plot (using ggplot2). So far I used ecdf() (from an example I found with google) to get values for the cumulatice distribution function which gives a relative curve. I also want to do the same plot but using absolute cumulative values instead of relative. Can that be done with ecdf or

Hi, I have a dataframe with around 100 columns. Now I want to redefine some of the columns as factors (using as.factor). Luckily all the names of the columns I want to redefine start with "crast". Thus I thought I can use grep() for that purpose... ...I found an example for redefining a single column as factor but that is not working with multiple columns I get from grep()... what I