similar to: rJava / RCMD javareconf fails

Hi, Wasn't able to see a bug report on this issue yet... Hope I'm not doublng up. There seems to be little info around for what "R CMD javareconf" does but it has some deprecation errors seemingly. On running cmd in terminal: Java interpreter : /usr/bin/java Java version : 9 Java home path : /Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home Java compiler :

Hi Ista! Thanks a lot for your support!! It puzzles me because it?s the first time that something like this happens to me. I?m aware that root and user don?t have the same environmental variables here. However, I don?t know why root chooses Java 9 and my user chooses Java 10. Isn?t Java 10 ready to be used as a root? It seems that we are going to have to wait until rJava releases a new

Good afternoon, A strange one - library(rJava) works for root but not for user sean On 64-bit Ubuntu 9.10, using R as root (sudo -i), I can say library(rJava) and it works fine with no error message of any kind. But logged in as myself user "sean", it can't start... sean at SeansPC:~$ R --no-save --vanilla R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for

Hi folks: I'm trying to update my JGR and related packages, but run into a compile problem, that I suspect must be affecting others. I get this output when compiling rJava, JavaGD, etc.: ## checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '' java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server

Hi Jeff!! I really don?t know if running R CMD javareconf with sudo has posed a problem here, now or in the past. What I know is sometimes it?s the only way to really config it, if I don?t run with sudo, in the end it asks me if I want to overwrite the configuration from root override rw-r--r-- root/admin for /usr/local/Cellar/r/3.4.4/lib/R/etc/Makeconf? (y/n [n]) y override rw-r--r--

Hi Chris, > I think the problem may be options setting where R/rJava will look for Java so I tried: > > options(java.home="/usr/lib/jvm/java-8-openjdk-amd64/") This should not be necessary. I would recommend to start a fresh R session in order to unset this. > As far as I can see Debian is happy with the setup of java and javac: > ... > And I have the full jdk

Hi, I am unable to install the package rJava. I tried doing what the output suggests, but it doesn't help. How can I get R to find/recognize my Java installation? I am running R-2.15.0. waichler at snow> sudo R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_22 Java home path : /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre Java compiler : /usr/bin/javac Java

I am not a Mac user, but I do use Linux and I would recommend not running R with sudo unless you are an admin ninja. That defensive practice would render the answer to your question moot. It is possible that your problem may have started with inappropriate use of sudo in configuring java, but configuring Java is not on-topic here. -- Sent from my phone. Please excuse my brevity. On March 27,

Hi folks: I guess my earlier posting was too involved, so let me try to get to the essence of my problem. I recently tried to compile JGR, rJava, etc. into my updated R. First, I ran: R CMD javareconf. The output from that tells me that "JAVA_HOME is not a valid path, ignoring" and the cpp flags are set to nothing. The javareconf fills most of the variables with references to

Given: $JAVA_HOME=~/jdk1.7.0_40 $R_SHELL=/bin/sh $PATH=$R_HOME/bin:$JAVA_HOME/bin:... which jar --> ~/jdk1.7.0_40/bin/jar which javac --> ~/jdk1.7.0_40/bin/javac which javah --> ~/jdk1.7.0_40/bin/javah which java --> '', even though there is one in $JAVA_HOME/bin whereis java --> java: /bin/java /usr/bin/java /sbin/java /usr/sbin/java /lib/java /usr/lib/java

attempting to install rJava on R-2.7.0, x86_64 platform, config.log shows the following error: configure:3880: checking whether JNI programs can be compiled configure:3898: gcc -m64 -std=gnu99 -o conftest -g -O2 -I/path/to/x86-64-linux/jdk-1.6.0_06/jre/../include conftest.c -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64/server -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64

On 10 October 2009 at 05:40, lmramba at gmail.com wrote: | > library(rJava) | Error in library(rJava) : there is no package called 'rJava' | > install.packages("rJava") | Warning in install.packages("rJava") : | argument 'lib' is missing: using '/usr/local/lib/R/site-library' | --- Please select a CRAN mirror for use in this session --- | Loading

I remember JGR installation on SuSE 10.3 as a nightmare that eventually I overcame with JGR designers' help. I have installed SuSE 11.1, latest R version and am trying to install JGR again. It is still a nightmare. I have followed the guidelines on http://jgr.markushelbig.org/JGR_on_Linux.html I have made sure I have the so R libraries. I have installed java-1.6.0-sun and its development

Hi! I?m on macOS 10.13.3 and just installed the new Java 10 using Homebrew Cask. I also have installed R with Homebrew. Everything seems to work fine, however I just get different outputs if I run sudo R CMD javareconf or R CMD javareconf. With sudo I get pointed to Java 9 and without sudo I get pointed to Java 10. I really don?t know why. Without sudo: $ R CMD javareconf

> library(rJava) Error in library(rJava) : there is no package called 'rJava' > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

> library(rJava) Error in library(rJava) : there is no package called 'rJava' > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Hello, I cannot get JGR installed. Here is what I have tried so far http://wiki.ubuntuusers.de/R 1. sudo -s # root werden R CMD javareconf root at gunnar-laptop:~# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.5.0_18 Java home path : /usr/lib/jvm/java-1.5.0-sun-1.5.0.18/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive

Esteemed useRs and Devs, Attempts to update package:rJava to the latest version have failed. See my code and output below. Notably, as suggested here http://stackoverflow.com/questions/3311940/r-rjava-package-install-failing $ sudo apt-get install r-cran-rjava ran successfully without error or warning, but my rJava package is not updated, and remains un-updatable... Greatly appreciate any

I am trying to build R on a Centos server without admin privileges (or support), so I can call R functions from NetLogo models (via the NetLogo R extension or possibly Rserve), but I'm getting stuck near the end of make. Any suggestions? Here's the setup... $ R_SHELL=/bin/sh $ R_HOME=~/R-devel $ cd $R_HOME; ./configure; make returns ... begin installing recommended package MASS

Hallo Zusammen, hatte gestern die Schnauze voll von Vista und habe mir daraufhin Ubuntu installiert. Bin also mit Ubuntu ?berhaupt nicht vertraut. Nun habe ich ohne Erfolg versucht, R zu installieren. Soweit ich der Anleitung folgen konnte habe ich es so wie auf http://wiki.ubuntuusers.de/R gemacht. Im Terminal kann ich R problemlos starten. Allerdings bei der Installation von